<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17627

Description Pectin acetylesterase
SequenceMASQKALETIGNTLSFHSNANPPFWIPIHIVIPERPTESTVFNVIVDFFNWNKVKIRYCDGASFDGHPESEQKGLDNIKCKLLEGTNAQEVRAIGVGYMQAWLLLDMLGKGIESALINPSALVDKPWSTLQRVKNLSLGHCQFQREDTKEQSDSDALENNPQYRLGVEFG
Length170
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.09
Grand average of hydropathy-0.359
Instability index32.85
Isoelectric point5.35
Molecular weight19076.38
Publications
PubMed=28401891

Function

Annotated function Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties. 
ECO:0000256	ARBA:ARBA00003534
ECO:0000256	RuleBase:RU363114
GO - Cellular Component
cell wall	GO:0005618	IEA:UniProtKB-SubCell
extracellular region	GO:0005576	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
GO - Biological Process
cell wall organization	GO:0071555	IEA:UniProtKB-KW
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP17627
No repeats found




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17627 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) FWIPIHIVI
2) QYRLGVEFG
24
162
32
170