<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17618

Description Uncharacterized protein
SequenceMDTSTYQGGTGGGESTMESVDWRTQMASDSRKKIVIKIMDTLKKHHPSWALEKPQEIKSIAQRLEEKIYTTTTSQSDYVRKISMKLLTMESRSANLVPNSLQCNSVSSSVNPSNPGSHGIHQVNNQGQQPLPIPVPSNHPQATQQILSQSIHSNIPSSGVQVSAGVSSALPPVNALSQPTISNISSQNPNLQNIQNFVNQRQIPTRQQQQQQQQQQQSQNSQQYLYRHQIHQIAKHNLHIQQQHQNLLQPSHFQPSSLSTAQQNQQSVIQHHQKSALRQQRQQPPASIVHQQPPPPQSNPMGLQTSATNLQQQQQPRLLSQKNSSSNVQQPHQHSIGQHKNFPTIHQQPTMLNNQHSTQVMQSKVSVPQKNHSMQGQRSQPELQVMPQLQTQSGQLQHQLNMKLQSNMSQRDMQQRLPTSGAFQQQNVIDQQQKQLFQQQRAMPEASSTSSDSTAQTGNQNNGDWQEEVYQKIKAMKDKYMPGLTDLYPKIMIKLHLLTCVDHQHNSLPQQPKNEQFEKVKMLKHIFDSCLNFLQVPRSNILPIYKEKLDLYEKQIINIILTFNRKPGPHLQQPLPSPTQVHPHESHMNSPNSTMFQLKQLQPHHQMKHHFLQKQQQQQFNRPTKQQQLQLPHIGVKIESLTRPGPPFSPQISSPTVDQQNPLTSVTKSATCTPLQSANSPFTMSSPSTPSTSHILGDSEKVNLGIPNAGNVGHQSNVASHSLSLPFGTPGISASPLLAEFTSPDGNHGNEALIVSGKSSSTIEKPIEHLLKVVKSISAKSLSASVSDIGSVVSMIDSIAGSRAGIKSRAAIGEDLVATTKCRLQSTTIGKRKTKMEPLNVVSSANNVNDSFKRFSYLEASELESTATSSIKRPRIKTSNALLEEIREINWGLIDTMVGISEEDVGSGTVVRESKEDEMEDLSMKAKLRFHSCVRMLSEPISLEEMTRTWDTCARAVISEYAHQTSGGAGGTFTSKYGPWEDCLTFTASA
Length990
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.04
Grand average of hydropathy-0.731
Instability index63.77
Isoelectric point9.38
Molecular weight110158.60
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17618
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     509.37|      68|      69|     206|     273|       2
---------------------------------------------------------------------------
  121-  208 (77.51/22.26)	HQV......NNQGQQPlpipvpsnhpQATQQI.................................L.SQ...SIH.sNI.......PSSGVQVSagvssalPPVNALSQ..PT...............ISNISSQNPNLQ.NIQNFVNQRQ.iptRQQ
  209-  280 (116.59/36.91)	QQQ......QQQQQQS..........QNSQQY.................................LYRH...QIH..QI.......AKHNLHIQ.......QQHQNLLQ..PS...............HFQPSSLSTAQQ.NQQSVIQHHQksalRQQ
  281-  341 (69.53/19.26)	RQQppasivHQQPPPP..........QSNPMG.................................L...........QT.......SATNLQ.Q.......QQQPRLLS.....................QKNSSSNVQQpHQHSIGQHKN.......
  370-  432 (84.02/24.70)	KNH......SMQGQRS..........QPELQV.................................MPQL...QTQsgQL........QHQLNMK.......LQ.SNMSQ..RD...............MQQRLPTSGAFQ..QQNVID........QQ
  433-  466 (43.85/ 9.64)	QKQ......LFQQQR..............................................................................................amPE...............ASSTSSDSTAQT.GNQNNGDW........Q
  503-  613 (58.13/14.99)	HQH......NSLPQQP..........K.NEQFekvkmlkhifdsclnflqvprsnilpiykekldLYEK...QII..NIiltfnrkP..GPHLQ.......QP...LPS..PTqvhpheshmnspnstMFQLKQLQPHHQ.MKHHFL..........Q
  614-  666 (59.74/15.59)	KQQ......QQQFNRP..........TKQQQL.................................QLPHigvKIE..SL.......TRPGPPFS.......PQ...ISS..PT...............VDQQNPLTSV....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.33|      15|      16|     799|     814|       4
---------------------------------------------------------------------------
  799-  814 (19.21/18.19)	IAGSRAGIKSrAAIGE
  817-  831 (25.12/17.82)	VATTKCRLQS.TTIGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.78|      11|      16|     667|     677|       5
---------------------------------------------------------------------------
  667-  677 (20.36/ 9.54)	TKSATCTPLQS
  683-  693 (20.43/ 9.60)	TMSSPSTPSTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.30|      16|      17|     920|     935|       6
---------------------------------------------------------------------------
  920-  935 (28.38/17.82)	EDLSMKAKLR.FHSCVR
  939-  955 (25.93/15.74)	EPISLEEMTRtWDTCAR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17618 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PGPHLQQPLPSPTQVHPHESHMNSPNSTMFQLKQLQPHHQMKHHFLQKQQQQQFNRPTKQQQLQLPHIGVKIESLTRPGPPFSPQISSPTVDQQNPLTSVTKSATCTPLQSANSPFTMSSPSTPSTSHILGDSEKVNLGIPNAGNVG
2) PPVNALSQPTISNISSQNPNLQNIQNFVNQRQIPTRQQQQQQQQQQQSQNSQQYLYRHQIHQIAKHNLHIQQQHQNLLQPSHFQPSSLSTAQQNQQSVIQHHQKSALRQQRQQPPASIVHQQPPPPQSNPMGLQTSATNLQQQQQPRLLSQKNSSSNVQQPHQHSIGQHKNFPTIHQQPTMLNNQHSTQVMQSKVSVPQKNHSMQGQRSQPELQVMPQLQTQSGQLQHQLNMKLQSNMSQRDMQQRLPTSGAFQQQNVIDQQQKQLFQQQRAMPEASSTSSDSTAQTGNQNNGDWQEE
3) VPNSLQCNSVSSSVNPSNPGSHGIHQVNNQGQQPLPIPVPSNHPQATQQILSQSIHSN
567
171
97
713
468
154










Molecular Recognition Features






MoRF SequenceStartStop




NANANA