<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17613

Description Uncharacterized protein
SequenceMAVTVPASTSLWDGVLEMTKSAQSKGADPLMWAVELSSSLLSAGVSMPSTKVAELLVSHICWSNNVPIAWKFLEKALSIRIVPPMLVLALLSNRVIPSRRSHPAAYRLYLELLKRHIFPLASEINGPNYHKIMESINDALHLYQKFGLESSEPGIILVEFIFSVVWQLLDASLDDENLLELVPDKKSIWPIKSLEMEIDDFGEKKTDSHSHQGLYKMNTTMAIEIIVQLFRNKATSRILNLARQNMSAHWMSFIHHLRLLVANSTAVRNSKDIIPEALLQLTSDNPVQLSRECKGKTISLQQFHAIAACGSLISSAGQSHGASRSAIWLPIDLFLEDTMDGYVVAATSASETLTDLLKAHQAITQASWQDTFLGLWIAALRLVQREGEAVEGPVPRLDTCLCLLLCTTTLAVVNIIEEEENALLQEDDDKHPHQGSETQILGNCRKSLVSSLQQLGDLEGLLTPPPSVTSIANQAAAKAIMFFSGIPVGSGYLDGVSFNDMPVNCAGNLRHLIVEACIARSLLDTSAYLWPGYVKGHSNQIPRAVSGQMPGWSSLMKGSPLTTQMMHTLVSIPASSLAEIEKIYGIAINGSDEEKISAATVLCGASLTRGWNIQEHIGSFIIKLLAPPVPVDYSGSESHLIVYAPMLNVLLVGISSIDCVQIISLHGLAPHLAGVLMPICEVFGSCSPTVSWTLPTGEHLCPLAVFSNAFTLLLKLWRFHQPPLEHVMGDVTPVGSQLTPEFLLLARNSQLASCVNSLDPKNRRGIFGRSNLSSLEPIFLDSFPKLAFWYKQHQACIASTLSDLKPGTSVYQIFDALLNMMFRKMNRGGQCTSTSGSSSSSGSIPEDCTLRLKLPAWDILEAVPFVLDAALTACAHGRLSPRELTTGLKDLADFLPASMATIVSYLSAETTRGLWKPAAMNGTDWPSPATSLAMVEKNMNKILSATGVDVPSLSAGGTTPTLPLPMAALVSLTITYKVDKVSEPVLNLAAPALNTLGASCPWPCMAIISALWVSKAKRWTDYLVFSASRTVFHHSSDAVVQLLRVCFSSAIGLPISCGGVASAGGAGSLLGHGFGSHCSGGISAVAPGILYLRVHRSVRDIMFMTEEIVSLLMHTVRDIVSLEVPVEKLRKPKNGMVMRYGEVSLYSAMTRIKLAASLGASLVWITGRLNLVQSLIKETLPSWFISGHKSDPSKGDSGGMTGMLMGYALAYFAVLSGAFAWGVDSTCSASKKRAVILGGHLEFMASALDGKISLGCNKATWRAYVSGFVSLMVLCAPKWVGEVDVEVLKRLSKGLRKWDEDELALALLGISGVNAMGAAAEMIVKSSV
Length1328
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy0.234
Instability index41.59
Isoelectric point6.59
Molecular weight143327.85
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17613
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     311.42|      97|     156|    1059|    1160|       1
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 1059- 1160 (146.29/110.57)	GVASAGGAGSLLGHGFGSHCSGGISAVaPGILYLRVHRSVRDImfMTEEIVSLLMHTVRDIVSlEVPVEKLRKPKNGMvMRYGEVSLYSAMTRIKLAASLGA
 1222- 1318 (165.12/104.87)	GVDSTCSASKKRAVILGGHLEFMASAL.DGKISLGCNKATWRA..YVSGFVSLMVLCAPKWVG.EVDVEVLKRLSKGL.RKWDEDELALALLGISGVNAMGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.14|      42|     161|     436|     517|       2
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  462-  505 (71.94/82.56)	LTPPPSVTSIANqaAAKAIMFFS...GIPVGSGYLDGVSFNDMPVNC
  804-  848 (69.20/21.90)	LKPGTSVYQIFD..ALLNMMFRKmnrGGQCTSTSGSSSSSGSIPEDC
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     273.76|      90|     277|     300|     409|       3
---------------------------------------------------------------------------
  300-  401 (134.50/103.12)	LQQFHAIAACGS...LISSAGQSHGASRSAIWL...PIDLFLEDTMDGYVVAATSASETltdllkaHqAITQASWQDTFL.GlwIAALRLVQreGEAVEGPVPRLDTCL
  580-  676 (139.26/78.02)	IEKIYGIAINGSdeeKISAATVLCGASLTRGWNiqeHIGSFIIKLLAPPVPVDYSGSES.......H.LIVYAPMLNVLLvG..ISSIDCVQ..IISLHGLAPHLAGVL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     143.66|      46|     629|     103|     166|       5
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  112-  166 (61.86/74.36)	LLKRHiFPLASEINGpnyhkiMESINDAlHLYQKFGLESSEPgIILVEFIFSVVW
  744-  789 (81.80/44.45)	LLARN.SQLASCVNS......LDPKNRR.GIFGRSNLSSLEP.IFLDSFPKLAFW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.77|      12|     277|     510|     524|       6
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  510-  524 (17.62/18.25)	RHlivEACIARSLLD
  792-  803 (23.14/14.17)	QH...QACIASTLSD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.66|      32|     143|     259|     290|       7
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  259-  290 (53.02/33.02)	LLVANST.AVRNSKDIIPEALLQLTSDN.PVQLS
  403-  436 (46.64/28.23)	LLLCTTTlAVVNIIEEEENALLQEDDDKhPHQGS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.74|      31|      33|      40|      72|      10
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   42-   72 (55.65/37.76)	SAGVSM...PSTKVAELLVSHICWS.NNVPIAWKF
   74-  108 (42.09/21.03)	EKALSIrivPPMLVLALLSNRVIPSrRSHPAAYRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17613 with Med33 domain of Kingdom Viridiplantae
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