<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17609

Description Uncharacterized protein
SequenceMKNNFGGGSNHVDKPTRDNWSQHAKAHDNFSNQDKFLKSSFLFSLSTQKPCVEGAMSAAVRSLSSQFQNVTNSQSQHVDKAWQALSNLKLSSRNYIKPGKSRPLANNGGSTSASFQDVRKPTQQFSSNVNNKNLGQNQAHQSNETYVAEASGRLGTMFSGGYASNPMEASGRNMNASYNNATNHGGYASNPMEASRRNMNASYNNATNSGYGIHNYVSEHYQSSCTPPSSTLKFPPVNPASISRHDDISLPPELCVECSHGFKLGLCPEASNHLQIMKDMLISISNDLLDNVDLNSDQIEKLRQDRIMLNKQIQQLEKHLQSRMVDHEGPKSNFTPNTAATRSFQYETPPTFASRIDATRLDDQFYMHNENNRWNSPSVSYSSVSNVSVSSAPVEREPYIPKYVEVNYIEGSDDKNWSKRDFPWTKEMEANNKKVFGNHSFRPNQREVINATMSGKDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSATMEWSEQQEILRELCSDNCNYKLLYVTPEKVAKSDFLLRQLENIHARELLSRFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPTVPVLALTATATASVKEDVVQALGLVDCVIFRQSFNRPNLRFSVVPKTKKCIEEMHEFIKKSHFDECGIIYCLSRMDCEKVAEKLKEYGHKVGFYHGSMEPDMRALVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQLSSCVLYYSYSDYVSYCENDVDCRRFLQLVHFGEKFDSFNCRKTCDNCLKSQTLVEKDVTQVAKHLVDLVKLTQQQVSASHILDVYKGSMSQIVKKYKHDKLRLHGAGKNAAKGEASRVLRHLVVEEILVEDVKKSDYGSASSVLKVNEKKAGSLIAGRQTITLRFPSGVKAFKSLRNDATPARGLSTSTITSTSASKQNPVQLDTSAQPQTQGDSALSAKLYSALRLLRTHLLREASEKGMSYSAHHIFVNETLHDIGRKIPRTKEELLEVHGIGKAKVSKYGDRVLKIIEDTVNAHYNNTTDKTKSITKSSSNSTDSIKRRRNTLDKIPNGDLGYEDEDDFVASTARSKKRVLEKPKPDPVAEAVDYFYEIPDEDLDLELFDKVCEIHTNASNPKPETEMKNIGGRVLPSW
Length1169
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.08
Grand average of hydropathy-0.570
Instability index42.66
Isoelectric point8.54
Molecular weight130997.18
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17609
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.57|      22|      23|     165|     187|       1
---------------------------------------------------------------------------
  149-  162 (21.69/ 8.97)	...EASGR.LGTMFS.....GGY
  165-  187 (44.21/30.99)	NPMEASGRNMNASYNNATNhGGY
  190-  211 (46.67/27.68)	NPMEASRRNMNASYNNATN.SGY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     368.53|     115|     159|     564|     694|       2
---------------------------------------------------------------------------
  564-  694 (177.11/196.37)	RFVIDEAHCVSQWGHDFRPDYQGL.GILKQkfptvPVLALTATATASVKEDVVQALGLVDCVIFRQSFNRPNLRfsvvpKT.KKCIEEmHEFIKKshfDECGIIYCLsrMDCEKVAEKLKEYGHKVGFYHGSM
  730-  846 (191.42/158.03)	RFVIHHSLPKSIEGYHQECGRAGRdGQLSS.....CVLYYSYSDYVSYCENDVDCRRFLQLVHFGEKFDSFNCR.....KTcDNCLKS.QTLVEK...DVTQVAKHL..VDLVKLTQQQVSASHILDVYKGSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.01|      49|     157|     213|     273|       4
---------------------------------------------------------------------------
  213-  261 (87.40/44.00)	IHNYVSEHYQSSCTPPSSTLKFPPVNPASISRHDDI..SLP..PELCV.ECSHG
  368-  414 (60.98/29.34)	.HNE.NNRWNSPSVSYSSVSNV.SVSSAPVEREPY....IPkyVEVNYiEGSDD
 1047- 1098 (69.63/32.38)	IEDTVNAHYNNTTDKTKSITKSSSNSTDSIKRRRNTldKIP.nGDLGY.EDEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.45|      11|     157|     344|     354|       5
---------------------------------------------------------------------------
  115-  127 (16.46/ 6.33)	FQDVRKPTqqFSS
  344-  354 (22.99/11.21)	FQYETPPT..FAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.36|      14|      16|      44|      57|       7
---------------------------------------------------------------------------
   44-   57 (25.43/18.64)	SLSTQKPCVEGAMS
   62-   75 (23.93/17.03)	SLSSQFQNVTNSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.03|      28|     171|     850|     877|       9
---------------------------------------------------------------------------
  850-  877 (46.58/31.83)	VKKYKHDKLRLHGAGKNAAKGEASRVLR
 1018- 1045 (46.45/31.73)	IPRTKEELLEVHGIGKAKVSKYGDRVLK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17609 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EASGRNMNASYNNATNHGGYASNPMEASRRNMNASYNN
2) SRNYIKPGKSRPLANNGGSTSASFQDVRKPTQQFSSNVNNKNLGQNQAHQSNETYVAEA
3) YNNTTDKTKSITKSSSNSTDSIKRRRNTLDKIPN
168
92
1055
205
150
1088










Molecular Recognition Features






MoRF SequenceStartStop




NANANA