<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17608

Description Uncharacterized protein
SequenceMATDTEDFEMISHIPFLAEYKNVAYVFVPSKEELGRPCGVKNPVLSCSLTSIERSQLRSQIQQLKHDTTKDCIMLRIIRVLPPVVPSSQVKANSSTWEASGETLNNIDHEAMAVDPALVLTIQPPFRGGNRQKIQEKIVKDKIKLPGFLSSEAHSLLKGVMLMCNGSSRLRCLKRIKVLVGLEFLLLAWRSLAMLLSPMEWGIQKWHGYLFWLVLLGLLAASPYITMDGAYHATPSGQTSALPPTRSVTCYYDLRF
Length256
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.08
Grand average of hydropathy0.025
Instability index48.48
Isoelectric point9.00
Molecular weight28675.29
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
box C/D RNP complex	GO:0031428	IBA:GO_Central
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
precatalytic spliceosome	GO:0071011	IBA:GO_Central
small-subunit processome	GO:0032040	IBA:GO_Central
U4/U6 x U5 tri-snRNP complex	GO:0046540	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
maturation of LSU-rRNA	GO:0000470	IBA:GO_Central
maturation of SSU-rRNA	GO:0030490	IBA:GO_Central
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17608
No repeats found
No repeats found




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17608 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA