<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17605

Description Uncharacterized protein
SequenceMSVPKSAARMDYWREYFGSANANIFDIIEGAIMMAASDYPNEFRIRRDSIAQTLFSCRLIKCSGCDKEELALPVDDNADDDDDDDDAGDDDGDEGVKYKSKLTDVDGNWSKESSKVINSSRNDDDDDEEEEEEEDDDDDHHRRDVEVNEMNHHVSNYSYGDAEALTDEIEEESQMFDEVMRIKEIVDNSPDESTFDICNSLRKLQLMNLSVETLKATEIGKSVNVLRKHASKDVRQIAKVLIEVWKRMVDEWVKATTKVTVSEATPESMNPSVLDEEEGLPSPPLDDLAFLNPHAMSLELSEKFFDGMDDYGNLRKSAESNKNRDNNRKPPVEKQNITKLKEQKPLNGPTMARKEDRDSNVMKQQTGVKPTRPPVANLAPRIKPNDRKLQNPEKPTLQKRPIAHQQRKPWRANEESVQDKLEETKRKLQERYQQAENAKRQRTIQVMELHDLPKQEVQVDRKNQQMRPGNNHNRHWAHGRC
Length481
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.05
Grand average of hydropathy-1.131
Instability index49.76
Isoelectric point4.94
Molecular weight55377.68
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17605
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.00|      40|      40|      55|      94|       1
---------------------------------------------------------------------------
   55-   94 (72.04/29.15)	FSCRLIKCSGCDKEELALPVDD..NADDDDDDDDAGDDDGDE
   98-  139 (63.96/25.25)	YKSKLTDVDGNWSKESSKVINSsrNDDDDDEEEEEEEDDDDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.18|      21|      26|     365|     390|       2
---------------------------------------------------------------------------
  365-  390 (28.18/37.89)	QtgvKPT..RPPVANlAPRiKP...ND...........RKLQ
  393-  429 (23.00/12.94)	E...KPTlqKRPIAH.QQR.KPwraNEesvqdkleetkRKLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17605 with Med26 domain of Kingdom Viridiplantae
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