<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17604

Description Uncharacterized protein
SequenceMEDEGMIQGVDKLTTPSYLVVALAVNGNKKTKYVVRWALDKFVPEGILLFKLILVRPKITRIPTPMGVVPASQVRDDVVIAYKKEVEWQAYEKLLPFKNMCAKKKVQVEILQIESDDVVDAIKQEIVKGNINKLVIGASSSGMFSRGKGLSSRISESIPSFCTVYAISKGKLSSLRASDSDTIGSSKDDNSSDSSSVTNSSRTEWTDQGSAATSFSQFFSTSLPMQRFEALSSINRTLHQRTSSFENPEKNTDFYRANSNDFSTRSFGTENHSWTSDQASSSYAHSEISTEIQGNNVDFELEKLRVELRHVRGMYAIAQNESFDASRKLKDLKERQAEESIKLKELKAKEEEAKTLAEQEKQEHEKAKRQAEYVKECLRREAAVRKDAEEKAYQEHREKEKLLDAIIGSSPHYQKFTWEEIVDACSSFSEDLKIGTGGNGIVYKSSFHHTVAAVKVLHSQEAHRTKQFQQELEVLSRIRHPHLLILIGACVDHGCLVYEYMENGSLDERLFRKNNTPPIPWFDRFRIAWEIASALVFLHNAKPKSIVHRDLKPANILLDRNLVSKIGDVGLSTMLQSDSCSTSTVYKDTGPAGTFCYIDPEYQRTGLVSPKSDVYALGMVILQLLTAKPAIGITDAVETAIEDDELAMVLDPEAGEWPIDEAKELAVLGLSCTEIRRKDRPDLKNTVLPVLERLKAVTGEAQRIASMTSTTPPNHFICPILKDVMVDPCVAADGYTYDRRAMEKWLEASDTSPMTNLPLPSRSLTPNYTLLSAIMEWKSSKQRFE
Length785
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-0.426
Instability index40.54
Isoelectric point6.10
Molecular weight88094.98
Publications
PubMed=28401891

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17604
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     146.31|      36|      37|     226|     262|       1
---------------------------------------------------------------------------
  198-  223 (32.07/16.29)	...........TNSSRTEWTDQGSAATSFSQFFSTSL
  226-  262 (56.46/38.86)	QRFEAlSSINRTLHQRTSSFENPEKNTDFYRANSNDF
  265-  299 (57.78/35.48)	RSFGT.ENHSWTSDQASSSYAHSEISTEI.QGNNVDF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.51|      22|      39|      73|      94|       2
---------------------------------------------------------------------------
   73-   94 (38.98/27.07)	QVR.DDVVIAYKKEVEWQAYEKL
  112-  134 (32.52/21.46)	QIEsDDVVDAIKQEIVKGNINKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.28|      16|      34|     349|     366|       3
---------------------------------------------------------------------------
  349-  366 (22.81/20.63)	KEEEAKtlAEQEKQEHEK
  386-  401 (28.46/18.52)	KDAEEK..AYQEHREKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.45|      21|      41|     138|     158|       4
---------------------------------------------------------------------------
  138-  158 (35.01/22.96)	ASSSGMFSRGKGLSSRISESI
  177-  197 (34.44/22.46)	ASDSDTIGSSKDDNSSDSSSV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17604 with Med32 domain of Kingdom Viridiplantae
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