<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17601

Description Uncharacterized protein
SequenceMDSNWRAGQSASGGVGDSSMESGDWRAQLQADSRQRIVNKIMDTLKRHLPFSGHEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETRSQNPMPDAMQSNSGANSVNPSDPGSQVMQQVNSQGQPLPIPVPSNHPQQNQQLLSQTMHNNLGSSGIQGSSSLSAAMPPGTGLAQSTISNVSSQNPSLQNIQNMSGVQVQQNSVGNTMGPNNFANQRQIQGRQQQQQQQQLAPPQQQQQQQQQQQQQQQQPTQNSHYLYQQQLQQMANKKLQVQQGNIAPMQQIQQQQQQQQQQNLLQPSVMQPTMMQSVQNQQSVVPQSSQPLMNHQQSALRQQRQQQVQVQVQPTQQQVQPTQSNPMGQQPNATNMQQNQLMGQQNTYSDMQQQQRMLGQQNKPQQHLIGQHNNLSGMQQQHIGQSSQSGGQQQLLGTQSGNSGMQQHMMQSKIPVQVQQQNQQNSGSLLPNQVQQSQPQLQQQVMPHMQAQSGQVGVGMQQQPNMMQGNMQQRLPTAGGFQQQNVIDQQKQLFQQQRPMQEASSTSLDSTAQTGNANGGDWQEEVYQKIKAMKDLYLLDLNDMHQKILGKLQQHDSLPQQPKNEQLEKLKVFKNMLERFMAFLQIQKHNILANYKDKLSTYEKQIVHVITSNRRKPAPTQQQQQPQQQLPPPHMQSQSQQTHENPMSSQMQTVNPVNLQGNSQQNGNPMSSLTGGSNPQQTMMNSMQPTSSLDPGQSMSGSGSQQMNMNPMGTLQPNPNMLHIKQQEQLLQSQQLKQFQNRQMQQQFLQKQQLMQQQQQQQFRQQGTQVNQMTQLHDTGGDIKLRQQQQQQQMGGVKPGTFQQVAGQRAGYHQQMKPGGSPFSPQLIPGGGSPQISQHASPQIDGQNMFKPANSPFTVPSPSTPGASPLPGELMSGVGVSSLTNGGNIGHGHGQLSGAVLTSQNLSIGTPGISASPLLAEFTSPDGNGVVASIGSGKSSAAEQPLDRLLKVVKSISSNALSSSVDDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARTLVTQEGTNPNAIRKMKRFTSAMPLNVVSSAGSVNDSFKQLTCAETSELDSTASSAIKRPRIETNHALLEEIKEINRGLIDTVVDISAEDVDPAAASTASEGADGTVVKCSFSAVALGPNLKSQYASAQMSPIQPLRLLVPANYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLKEIARTWDICARAVISEYAQQTGGGTFSSKYGTWENCLSVVN
Length1272
PositionTail
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.03
Grand average of hydropathy-0.800
Instability index65.15
Isoelectric point9.31
Molecular weight139566.55
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17601
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.17|      34|      45|     218|     256|       1
---------------------------------------------------------------------------
  220-  263 (52.09/14.62)	NQRQIQGrqqqqQQQQLAPPQQQQQQQQQQQQQQQQPtqnshYL
  374-  407 (46.07/ 6.91)	QQNQLMG.....QQNTYSDMQQQQRMLGQQNKPQQHL.....IG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     268.03|      49|      50|     875|     923|       2
---------------------------------------------------------------------------
  288-  340 (54.85/10.46)	.QIQQQQQQ...QQQQN..LLQ.PSVMQPTmmQSVQNQQS..VVPQSSQPlmN.H.....QQS..alrqQ
  424-  475 (50.61/ 8.99)	SQSGGQQQLlgtQSGNSgmQQHMMQSKIPV..QVQQQNQQNSG...SLLP..NqV.....QQS......Q
  476-  512 (48.58/ 8.29)	PQLQQQVMP...HMQAQ..SGQV...................GVGMQQQP..N.MmqgnmQQR......L
  714-  755 (43.94/ 6.69)	..............SNP..QQTMMNSMQPT..SSLDPGQSMSGSG.SQQM..N.MnpmgtLQP......N
  879-  930 (70.04/15.71)	PQIDGQNMF...KPANS..PFTVPSPSTPG..ASPLPGELMSGVGVSSLT..N.G........gnighgH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.37|      28|      28|     777|     804|       5
---------------------------------------------------------------------------
  668-  704 (36.62/ 7.49)	PPPHMQS..QSQQtHENPMSSQMQtvnpvnlQGNSQQnG
  777-  804 (51.45/14.28)	QNRQMQQ..QFLQ.KQQLMQQQQQ.......QQFRQQ.G
  806-  833 (34.30/ 6.43)	QVNQMTQlhDTGG.DIKLRQQQQQ.......QQM..G.G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.00|      11|      17|       1|      11|       6
---------------------------------------------------------------------------
    1-   11 (22.45/16.27)	MDS.NWRAGQSA
   20-   31 (17.55/10.74)	MESgDWRAQLQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.17|      15|      16|     976|     990|       7
---------------------------------------------------------------------------
  976-  990 (23.69/15.11)	SSAAEQPLDRLLKVV
  995- 1009 (23.48/14.91)	SNALSSSVDDIGSVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.64|      16|      16|    1174|    1189|       8
---------------------------------------------------------------------------
 1174- 1189 (30.61/20.20)	SPI..QPLRLLVPANYPN
 1191- 1208 (20.03/10.01)	SPIllDKFPVEISKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.45|      17|      17|     626|     642|      10
---------------------------------------------------------------------------
  626-  642 (28.56/17.67)	HNILANYKDKLSTYEKQ
  645-  661 (29.88/18.88)	HVITSNRRKPAPTQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.72|      37|      42|     133|     174|      11
---------------------------------------------------------------------------
  133-  174 (54.23/32.28)	LPIPVPSNHPQQNQQLlsQTMHNnLgsSGIQ.GSSSLSAAMPP
  178-  215 (63.49/24.76)	LAQSTISNVSSQNPSL..QNIQN.M..SGVQvQQNSVGNTMGP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.48|      38|     112|    1115|    1158|      15
---------------------------------------------------------------------------
 1115- 1158 (54.19/51.67)	IKEINRGLidtvvDISAEDVDPAAASTASEGA....DGTVVKCsFSAV
 1230- 1271 (65.30/44.31)	LKEIARTW.....DICARAVISEYAQQTGGGTfsskYGTWENC.LSVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.82|      26|     545|      32|      61|      21
---------------------------------------------------------------------------
   32-   61 (41.29/34.12)	DSRQRIVNKimdtLKRH..LPF.SGHEGLQELK
  580-  608 (38.53/21.75)	DMHQKILGK....LQQHdsLPQqPKNEQLEKLK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17601 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISLKMLTMETRSQNPMPDAMQSNSGANSVNPSDPGSQVMQQVNSQGQPLPIPVPSNHPQQNQQLLSQTMHNNLGSSGIQGSSSLSAAMPPGTGLAQSTISNVSSQNPSLQNIQNMSGVQVQQNSVGNTMGPNNFANQRQIQGRQQQQQQQQLAPPQQQQQQQQQQQQQQQQPTQNSHYLYQQ
2) KQIVHVITSNRRKPAPTQQQQQPQQQLPPPHMQSQSQQTHENPMSSQMQTVNPVNLQGNSQQNGNPMSSLTGGSNPQQTMMNSMQPTSSLDPGQSMSGSGSQQMNMNPMGTLQPNPNMLHIKQQEQLLQSQQLKQFQNRQMQQQFLQKQQLMQQQQQQQFRQQGTQVNQMTQLHDTGGDIKLRQQQQQQQMGGVKPGTFQQVAGQRAGYHQQMKPGGSPFSPQLIPGGGSPQISQHASPQIDGQNMFKPANSPFTVPSPSTPGASPLPGELMSGVGVSSLTNGGNI
3) MDSNWRAGQSASGGVGDSSMESGDWRAQLQADS
4) QQNLLQPSVMQPTMMQSVQNQQSVVPQSSQPLMNHQQSALRQQRQQQV
5) VIDQQKQLFQQQRPMQEASSTSLDSTAQTGNANGGDWQEE
6) VQVQPTQQQVQPTQSNPMGQQPNATNMQQNQLMGQQNTYSDMQQQQRMLGQQNKPQQHLIGQHNNLSGMQQQHIGQSSQSGGQQQLLGTQSGNSGMQQHMMQSKIPVQVQQQNQQNSGSLLPNQVQQSQPQLQQQVMPHMQAQSGQVGVGMQQQPNMMQGNMQQRLPTAGGFQQQ
85
641
1
298
523
347
266
926
33
345
562
521










Molecular Recognition Features






MoRF SequenceStartStop




NANANA