<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17589

Description Uncharacterized protein
SequenceMADKKQLILVVEGTAALGPYWRTIVSDYLEKVIRSFCDSESLKPSGTIAELALIIFNAHGSFSSCLVQRSGWTRNVDYFFEWLSAIHFTGGGFCDAAIAEGLGEALMMFPPQSMPQNQHNLGVQRHCILVAASNPYPLPTPVYRPPMQKIEPTDNNEAQSESRLSDAETIAKAFAQCSVSLSVICPKQLPKLKAVYNAGKRNPSAADPTIDIVKNPHYLVLISETFMEARAALSRSGITNLPSQSPIKVDATSIPPVSAPPPSSVPPANGSMMNRQPVPVGNIPPATVKVEPTTVTSMPPVPVPIPAPSFQHVPPVQRPTPPPMQMSSPLSVSQEMLSSNDGIQDMKPIVSNIQPPMRPAVTVNHNILNNLSQARIINQAAIAGGTSMGIPNPMAVHMSNMISSGMASTIPVAQTVISSGQSVIPSMAMPTTSTVPGSFASATSNISQPIQGSVGMGNSVPGMSQGSIPGPQMVQSGMGMSQNNMMSGVVGVGQTGSGTGTATGTGTMTGMGSMMPTPVMTQQQVQGMQSGGVNNNNNNTAANVGLTQQSTGALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASESLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISGQQPQPQQLQPQQHPQMQQQQQQMQQQHLQQIPPQGQQQQQAAPPQQQQMVGTGMNQGYVQGPGGRTQMVVSQGQVSSQGPQSMSSGSFIN
Length775
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.05
Grand average of hydropathy-0.231
Instability index57.55
Isoelectric point9.00
Molecular weight82470.41
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17589
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     363.76|     124|     167|     135|     299|       3
---------------------------------------------------------------------------
  142-  289 (190.52/115.89)	VYRP...PMQKIEPTdnneAQSESRLSDAETIakafAQCSVSLSVICPKQLPK.......LKAVYNAGKRNPSA.ADPTIDIVKNP...HYLVLIS....ETFMEARAALSrSGitnlPSqspikvdatSIPPVSAPPPSSVP............PANGS..MMNrqPVPV...GNIP.PATVK
  316-  475 (173.25/60.29)	VQRPtppPMQMSSPL....SVSQEMLSSNDGI....QDMKPIVSNIQPPMRPAvtvnhniLNNLSQARIINQAAiAGGTSMGIPNPmavHMSNMISsgmaSTIPVAQTVIS.SG....QS.........VIPSMAMPTTSTVPgsfasatsnisqPIQGSvgMGN..SVPGmsqGSIPgPQMVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.11|      24|      33|     477|     505|       4
---------------------------------------------------------------------------
  477-  499 (39.28/14.37)	.....GM..GMSQNNMMSGVVGVGQTGSGT
  505-  523 (17.86/ 8.80)	TgtmtGM..G....SMMPTPVMTQQ.....
  524-  551 (31.97/ 7.93)	Q..vqGMqsGGVNNNNNNTAANVGLTQQST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.73|      15|      35|     714|     730|       7
---------------------------------------------------------------------------
  714-  730 (25.07/15.48)	QQIPPQGQQQQQAapPQ
  752-  766 (27.66/11.05)	QMVVSQGQVSSQG..PQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.34|      17|      55|      36|      56|       8
---------------------------------------------------------------------------
   36-   56 (25.69/27.12)	FCDSESLKPSGTiaelALIIF
   93-  109 (31.65/21.70)	FCDAAIAEGLGE....ALMMF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.27|      11|      18|     644|     654|       9
---------------------------------------------------------------------------
  644-  654 (19.65/13.38)	KLCAVIQL..PSQ
  663-  675 (16.62/ 9.92)	KACRLIGMlfPGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17589 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSRSGITNLPSQSPIKVDATSIPPVSAPPPSSVPPANGSMMNRQPVPVGNIPPATVKVEPTTVTSMPPVPVPIPAPSFQHVPPVQRPTPPPMQMSSPLSVSQEMLSSNDGIQDMKPIVSNIQPPMRPAVTVNH
2) FKPQISGQQPQPQQLQPQQHPQMQQQQQQMQQQHLQQIPPQGQQQQQAAPPQQQQMVGTGMNQGYVQGPGGRTQMVVSQGQVSSQGPQSMSSGSFIN
3) NMMSGVVGVGQTGSGTGTATGTGTMTGMGSMMPTPVMTQQQVQGMQSGGVNNNNNNTAANVGLTQQ
4) QSVIPSMAMPTTSTVPGSFASATSNISQPIQGSVGMGNSVPGMSQGSIPGPQMVQSGMGMS
232
679
484
421
365
775
549
481










Molecular Recognition Features






MoRF SequenceStartStop




NANANA