<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17587

Description Uncharacterized protein
SequenceMDNNPQNSGAQSLRPPAIGSIGSQSFGTNFSIQFRPVVPSQQGQAHAFMQSGSGSQQYRPQFSQPRPGQPPSSQAMPMSSYMQQQPNMPMSSSSSSSSSSYTFTAPSFGTNVSSQFQMQTPVGGQPWPSSGNQGPLAVAPMPQTGHQPTNQQALNVLHSSSQEASSDWQEYTAGDGRRYYYNKNTKQSSWEKPLELMTPLERADASTVWKEFTTAEGKKYYYNKDTKQSKWTIPEELKLAREQAEKEASRSSQTEMVTNPNAPAISTPSALDQSSVNDISSTIPRVASSPAPHNVGSESSSVAIPLNPAVVAASMIPPNLHSSPMKMEDSSSHGVPKTLDGVSTHDTEEAKKGMAVAGKVNTTQIEEKVVDDEPFIYASKQEAKVAFKALLEDANVEADWNWEQAMRVIINDKRYGALKTLGERKQAFNEYLMQRKKLEAEERRLRQRKAKEEFTKMLEESKELTSSMRWSKAMAMFEDDERYKAVDRPSDREDLFQNYLVDLQKKERAKAQEEQRQYRSEYKQFLETCGLIKVDTQWRKVQDRLEDDERCSRLDKIDRLEIFQEYIRDLEKEEDEQRKIKKEHIKRVERKNRDEFRKMMEEDVNSGTLTAKTQWRDYCQKVKESVAYQAVASNTSGSTPKDLFEDVAEELEKKYHDDKTRVKDAMKLKKVSVVPTWTFEDFKAAIEDDIISSLSDINLQLVYEDVVERAKEKEEKEAKKRQRLTKEFTDLLYDIKDITASSTWEECQPLFEETSEYRGIGDEGVAREAFEEYVARLVDKAKERERKREEDKVRKEEKERRKEKERREKEKEKEKRLKKDKDDSDSENLDMMMEITTTTTKEDKKRDKKHRKRHHHQQQQQDDNDDDATSDKDEREDLDSSSKKSSSRRHGKKSRKHASAYSPESDSRDSESKHKKQKRDSRKNGNGGGEELEDGELGAGEDGEIQ
Length946
PositionUnknown
OrganismLactuca sativa (Garden lettuce)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> campanulids> Asterales> Asteraceae> Cichorioideae> Cichorieae> Lactucinae> Lactuca.
Aromaticity0.07
Grand average of hydropathy-1.212
Instability index56.23
Isoelectric point5.86
Molecular weight108485.85
Publications
PubMed=28401891

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17587
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     169.42|      36|      38|     168|     205|       1
---------------------------------------------------------------------------
  168-  196 (49.07/26.70)	..........WQEYTA..GDGRRYYYNKNTKQSSWEKPLEL
  199-  237 (62.54/39.67)	PLERADAstvWKEFTT..AEGKKYYYNKDTKQSKWTIPEEL
  420-  443 (27.26/11.18)	..............TL..GE.RKQAFNEYLMQRKKLEAEER
  444-  472 (30.55/10.68)	RLRQRKA...KEEFTKmlEESKEL.....TSSMRWSK....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     131.31|      21|      30|      19|      41|       2
---------------------------------------------------------------------------
   19-   39 (40.84/18.49)	GSIGSQ.........SFGTNFSIQFRPVVP
   52-   70 (37.47/16.29)	GS.GSQ.........QYRPQFS.QPRPGQP
   73-   89 (24.92/10.06)	....SQ.........AMPMSSYMQQQPNMP
   92-  121 (28.07/ 9.46)	SSSSSSsssytftapSFGTNVSSQFQMQTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.88|      22|      22|     273|     294|       3
---------------------------------------------------------------------------
  273-  294 (38.16/24.08)	QSSV..NDISS.TIP....RVASSPAPHN
  295-  319 (25.69/13.83)	VGSE..SS.SV.AIPlnpaVVAASMIPPN
  322-  346 (25.03/13.29)	SSPMkmEDSSShGVP....KTLDGVSTHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     335.19|      51|      56|     784|     834|       4
---------------------------------------------------------------------------
  508-  561 (37.50/12.24)	RAKAQEE.QRqYR.SEYK............................qfletcglikvdtQWR...KVQDRLE.DDERCSRL.DKiD...R...........LE
  568-  602 (48.58/17.88)	RDLEKEE.DE.QR.KIKK.........................................EHI...KRVER.............K.N...RD....EFRKMMEE
  651-  734 (34.92/10.93)	LEKKYHD.DK.TRvKDAMklkkvsvvptwtfedfkaaieddiisslsdinlqlvyedvvERA...KEKE..EKEAKKRQRL.TK...........EFTDLLYD
  740-  783 (26.37/ 6.58)	ASSTWEEcQP.LF.EETS.........................................EYRgigDEGVAREAFEEYVARLvDK.A...KE............
  784-  834 (83.19/35.49)	RERKREE.DK.VR.KEEK.........................................ERR...KEKERREKEKEKEKRL.KK.D...KDDSDSENLDMMME
  839-  883 (57.16/22.25)	TTK...E.DK..K.RDKK.........................................HRK...RHHHQQQQQDDNDDDA.TS.D...KD..EREDLDSSSK
  885-  933 (47.47/17.31)	SSSRRHG.KK.SR.KHAS.........................................AYS...PESDSRDSES.KHKKQ.KR.DsrkNGNGGGEELE....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.21|      13|      65|     405|     417|       6
---------------------------------------------------------------------------
  405-  417 (23.58/13.56)	AMRVIINDKRYGA
  473-  485 (23.63/13.60)	AMAMFEDDERYKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17587 with Med35 domain of Kingdom Viridiplantae
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