<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17544

Description U-box domain-containing protein 35 isoform X1
SequenceMWLQRSGNVGSKIGAGGNGFIALAVDKEKGSQAALRWAIDNLLTKGQTIVLIHVVLRASSSPYGGSQYIICDSNKAAASPHAQKLEKETKDLFLIFHCYCARKDIHCLDVVLEDTDTAKALTEFLSYAAIENCVLGASRHAFIRFKTSSISSSVSKGAPDFCTVYVVSKGKISSVRNAARPAPYVSPLLDHIQKLSTSIVKAPETPPRRSMNICADRTSFKPRNSCDDSFRPQFTKGGRVLNLRSHLDISESDTDISFISSGRPSTDQMSPSLYDFSDSAPTSQFSTSSDQSIGSIRLGPKFNGPNFLHDLSFSQESSRTSSSWSSQNLVTDDVEAEMRRLKLELKQTMDMYSKACSEALTAKQKAMELQHWRLEEERKLEEARLSEEAALAIAEQEKARCRAAMEAADAAKRIAELESQRRANAEIKALKEAEQMRKVLDSLAKSDIKYRRYTIDEIEDATESFAASRKIGEGGYGPVFRCYLDHTPVAVKLLRPDAAQGRSQFQQEIDVLSCIRHPNMVLLLGACPEYGILVYEYMANGSLDDRLFRKGNSPVLSWQLRFKIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNYVSKISDVGLARLVPAVAENVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIVLLQLLTAKPPMGLTHYVGNSIEKGTFTEMLDPAVTNWPVEEALCFAKLSLQCAELRRKDRPDLCKEVLPELLRLKELAEEKMNHVLLGGSAGLSPNHNVVLVQQDVMSDPLLVDSGISKSRSSTSSLKEDSQA
Length789
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.290
Instability index50.48
Isoelectric point6.82
Molecular weight87178.36
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17544
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     284.02|      95|     139|     504|     613|       1
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  504-  602 (156.08/144.09)	QFQQE..IDVLSCIRHPNMVL..LLGACPEYGILvyEYMANgSLDDRLFRKGNSP.VLSWQL....................RFKIAAEIATGLLFLHQTKPEP...................LVHRDLKPGNILLDHNyVSK
  637-  775 (127.95/83.71)	EYQQTgmLGVKSDIYSLGIVLlqLLTAKPPMGLT..HYVGN.SIEKGTFTEMLDPaVTNWPVeealcfaklslqcaelrrkdRPDLCKEVLPELLRLKELAEEKmnhvllggsaglspnhnvvLVQQDVMSDPLLVDSG.ISK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     148.92|      49|     138|     106|     161|       2
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  106-  161 (71.29/56.30)	HcLDVVLEDTDTAkalteFLSYAAIENCVLGASRHAF......IRFKTSSISS..SVSKGaPDF
  246-  302 (77.63/42.88)	H.LDISESDTDIS.....FISSGRPSTDQMSPSLYDFsdsaptSQFSTSSDQSigSIRLG.PKF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     161.01|      53|     141|      25|      81|       3
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   25-   81 (78.34/69.53)	VDKEKGS..QAALRWA..IDNLLTKGQTivLIHVVLRASSSPYGGSQYiICdSNKAAASPH
  167-  223 (82.67/56.96)	VSKGKISsvRNAARPApyVSPLLDHIQK..LSTSIVKAPETPPRRSMN.IC.ADRTSFKPR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.10|      18|      19|     388|     406|       4
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  388-  406 (25.62/23.44)	EAALAIAEQEKARcRAAME
  409-  426 (30.48/20.93)	DAAKRIAELESQR.RANAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17544 with Med32 domain of Kingdom Viridiplantae
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