<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17542

Description mediator of RNA polymerase II transcription subunit 15a-like
SequenceMEVKDWRDRLSPESRERIVRRIMDILKKQIRSSGRDGLSQIKTLSENFEKKIYESATDENDYLKKISVKLLTVEEKIEKLSQSNSLLSKSYSGETTAPRSIQSQVDKHRQSLSLHSYQSQHQLSRSTQNNIAPCGTSSSLPSSGHPLSDLIETPMPNAATEDSNLQRTSRISQMAAEWSVGHGIYSDVSLNNPIQVQGRKHPPQVVVQQNHQQPQKLQLDSCQLPLQPRLLKPLKNEFVSPSHLQVHGQEGQSGQQNDQKLSRPNQMQSCQLSVTQTPFTRPSETQSCVVSDHLQYRQPSCQQSLQPLLMRHPQRQLQKTHQAPVTHKHKSPMRDQIPSISHQQPQSINQNMADTYVTQNQLIGQQHLVPDSLQQQQRLPFLQNKAQNMQQEPLQGQQNNQSSRHHQQLAQQKDFSVLKPQLKLHGKQCGNYTMHQTQVAAEGHTQKTASALLPPQGQQSQPQLPVRELISQSQLEKVQPPPTPSQPDTMEISEASGPLNLTSEKSFANIGDWQEEVYQRVESLKSRYLKQLNGLRHTLTNRLQQQDSAPCPTNTGQLEKINLALNLTIAYLNVPKSKITPSYAEKLDTLQKKILWILQLTGKKSDSSPREGKLFPDIYSVQQLPQPQTQTSEAQQLQNLHMRQTKEQLDVLAQKPELGFQKPNMQQQLVRENHQILPQQAAKPHAHAKRQIQLNEVNELKVRLGTSVNKSQHQENAVNDSRVKGGMGVKSGRILQNQSGATCSVYSSQHAKPGASVPISSSEVSCHPLAHHCPRIDVQNLPTPLTEAGTCFHSAKSCSALPSSLAQPSMLGNCEKPTFDAPSGLDTGNIRHPHVPGSLGPGQSLAICTPGMSVSPYLEELDTLDGTNCNMPTFNYDQSSVAEQPIKRLINVVNSISSKKLSAAIGDIGSVIGITDWISSSLPANGSRAAIGEDLVAMTKSSLQARYLTGWNDTSGTRKRNRCTNWIASNPSPMNDGFRQWIDLEKPELESSAMSCTKRPRIEVKHVLLEEIRKINQQLIDTVVVISDEHTISTAGGGEGTIVMCSFTAVAACPNFKSQPVSSQASPIQPLKLLVPASYPHTSPVLLDKMPVGARENHQDLSVKVISKLNSCLRTLSNPFSVGEIARMWDFCVREVVLEYAVQNGGGNFSSKYGTWETCLGAA
Length1163
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.04
Grand average of hydropathy-0.655
Instability index57.38
Isoelectric point8.97
Molecular weight129020.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17542
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.28|      20|      23|     695|     717|       1
---------------------------------------------------------------------------
  697-  716 (34.59/19.96)	VNELKVRLGTSVNKS...QHQEN
  718-  740 (29.70/12.45)	VNDSRVKGGMGVKSGrilQNQSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     801.45|     138|     140|     244|     382|       2
---------------------------------------------------------------------------
   78-  158 (101.87/35.90)	...............EKLSQSNSL..LSKSYS.GE..T..TAPRSIQS.QVDKHRQSLSLHSYQ...........S.QHQLSRS.T.QNNIA...........PCGTSSSLPSSGHPLSDLIETPM.................P......NA.........
  159-  245 (110.36/39.50)	........ATEDSNLQRTSRISQM...AAEWSV...................GHGIYSDVSLNN...........PIQVQGRKHpP.QVVVQQNHQQPQKLQLDS...CQLP....LQPRLL.KPLKNEFVS...........P......SHLQ.......
  246-  381 (237.60/94.18)	..VHGQEGQSGQQNDQKLSRPNQM..QSCQLSVTQ..TPFTRPSETQSCVVSDHLQYRQPSCQQ...........SLQPLLMRH.P.QRQLQKTHQAPVTHKHKSPMRDQIPSISHQQPQSINQNMADTYVTQNQLIGQQHLVP......DSLQQQQRLPF
  387-  466 (111.88/38.45)	QNMQ.QEPLQGQQNNQS.SRHHQQlaQQKDFSVLK...P..............QLKLHGKQC.......................G.NYTMHQTQVAAEGHTQKT................................ASALLPP......QGQQSQPQLPV
  471-  591 (117.46/42.50)	.......SQSQLEKVQPPPTPSQP..DTMEISEAS..GPLNLTSEKSFANIGD....WQEEVYQrveslksrylkQLNGL..RH.TlTNRLQQQDSAPCPTNTG.............QLEKINLALNLTIAYLN..VPKSKITPsyaeklDTLQ.......
  598-  684 (122.27/44.54)	LQLTGKKSDSSP.......REGKL..FPDIYSVQQlpQPQTQTSEAQ............................QLQNLHMRQ.T.KEQLDVLAQKP..............ELGFQKP.....NM......QQQLVRENHQI.........LPQQAAKP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.68|      16|      19|     802|     817|       4
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  795-  814 (23.55/10.62)	AKScsalPSSLAQPSMLGNC
  831-  848 (24.13/11.08)	RHP..hvPGSLGPGQSLAIC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.35|      21|      23|      30|      52|       6
---------------------------------------------------------------------------
   32-   52 (34.28/29.53)	SSGRDGLSQIKTLSENF...EKKI
   54-   77 (28.07/14.96)	ESATDENDYLKKISVKLltvEEKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.85|      16|      17|    1099|    1114|       7
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 1099- 1114 (26.44/16.19)	QDLSVKVISKL.NSCLR
 1118- 1134 (25.41/15.30)	NPFSVGEIARMwDFCVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.67|      17|      17|     970|     986|      10
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  970-  986 (32.28/18.71)	NPSPMNDGFRQWIDLEK
  990- 1006 (29.38/16.40)	ESSAMSCTKRPRIEVKH
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17542 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FQKPNMQQQLVRENHQILPQQAAKPHAHAKRQIQLNE
2) GKQCGNYTMHQTQVAAEGHTQKTASALLPPQGQQSQPQLPVRELISQSQLEKVQPPPTPSQPDTMEISEASGP
3) KPLKNEFVSPSHLQVHGQEGQSGQQNDQKLSRPNQMQSCQLSVTQT
4) LSKSYSGETTAPRSIQSQVDKHRQSLSLHSYQSQHQLSRSTQNNIAPCGTSSSLPSSGHPLSDLIETPMPNAATEDSNLQRTSRISQ
5) PREGKLFPDIYSVQQLPQPQTQTSEAQQLQNLHMRQTKEQ
6) QNQLIGQQHLVPDSLQQQQRLPFLQNKAQNMQQEPLQGQQNNQSSRHHQQLAQQKDFSVLKPQLKL
7) SCQQSLQPLLMRHPQRQLQKTHQAPVTHKHKSPMRDQIPSISHQQPQSINQNMADTYV
8) VRLGTSVNKSQHQENAVNDSRVKGGMGVKSGRI
660
426
232
87
609
359
300
702
696
498
277
173
648
424
357
734










Molecular Recognition Features






MoRF SequenceStartStop




NANANA