<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17534

Description mediator of RNA polymerase II transcription subunit 33B-like
SequenceMPMEVSVHAVEEALSLWDGVLELTKSAQDQNSDAVLWAMRLSASLSSAGVTLPSVELAHILVSHICFANHVPITWKFLERALTVKIAPPMLVLSLLSTRVIPNRQHQPGAYRLYMELLKRHAFSFTSHIHGPSYQKIMKSIDDVLHLSQIYGLQVGEPGVILVEFVFSIVWQLLDASLDDEGLLELTPEKKSRWPTRPQDMEIDGHNSFSEMVIEHNEGLQKVNTAMAIEIIAEFLQNKVTSRILFLARRNMPSHWGGFIQRLQLLAAKSAVLRDLKHVTAQTLLQLTSDVRQVMSRECKTMSGREFHAVIASGSLTSANQSQGIGWSALWLPIDLYLEDSLDGSNVTANSSVEVLSGLVKTLQAVNGTTWHNTFLGLWIAALRLVQRERDPSEGPVPRLDTCLCLLLSITTLAVANIIEEEECELIDETEHSPTNQRKQKQVLGKRRIDLITSLQLLGNHEHLLAPPQAVSSVANQAAAKAIMFVSGLPVGNGYYESMSVNDMPMNCSGNMRHLIVEACIARNLLDTSAYFWPGYVNARCNQVPRNVSGQLPGWSSLMKGSPLTPPLINALVATPASSLAEIEKVYEIALSGSKDEKISAATILCGASLFRGWNVQEHTILFITVLLSPSVPADYSGSESHLIDCAPFLNVLLVGISTVDCVQIFSLHGLVPLLAGALLPICEVFGSLPNVSWTLTTGEELSCHTVFCNAFTLLLKLWRFDHPPLEHVMGDAPPVGSQMSPEYILLVRNLRLSSFGKLPRDRMKTKRLSKLITVSLEPIFMDSFPKLKLWYRQHQECIASTLSGLVPGTPVHQIVDALLNMMFRKMNRGGQPLTPTTSGSSNSSASGVQDASIRLEVPAWDILEATPFVLDAALTACAHGRLSPRELATGLKDLADFLPATLATIASYFSAEVTRGIWKPAFMNGTDWPSPAANLSNTEKQIKKILAATGVDVPSLAVGGSSPASLPLPLAALVSLTITYKLDRATERFLTMVGPALNSLGAGCPWPCMPIISSLWAQKVKRWSDFLVFSASGTVFHHSSDAVVQLLKSCFTSTLGLSSSHICSNGGVGALLGHGFGSHFSGGISPVAPGILYLRVHRSFRDVMFMTEEIVSLLMLSVREIASGGSPRDKVEKLKKTKYGMRYEKVSLAAAMTRVKLAASLGASLVWISGGSSLVQSLIKETLPSWFLSVHGLGQEGGESGGMVAMLGGYALAYFAVLCGTFAWGVDSELPASRRRPKILGCHLEFLASALDGKISLGCDCATWQAYVSGFVSLMVACTPMWVLEINVDVLKRLSKGLRQWNEEELALALLGLGGIDSMGAAAELIIECKF
Length1332
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy0.194
Instability index45.87
Isoelectric point6.55
Molecular weight144802.28
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17534
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     468.08|     125|     139|     645|     783|       1
---------------------------------------------------------------------------
  519-  643 (126.92/103.24)	...ACIARNLLDTSAYFWPG........YVNARCnqvprNVS.....GQLP..GWsSLMKGSPLTPPLI..NA...LVATPA.SSLAEIEKVyeialsgskdekisaatilCGASLFRGWNVQEHTILFITVL.LSP..SV.PADYSGS..E..SHL...........................
  658-  783 (215.28/146.23)	STVDCVQIFSLHGLVPLLAG........ALLPIC.....EVF.....GSLPnVSW.TLTTGEELSCHTVFCNAFTLLLKLWR.FDHPPLEHV...................MGDAPPVGSQMSPEYILLVRNLRLSSFGKL.PRDRMKT..KRLSKLITVSL................EPIFMD
  794-  925 (125.88/76.07)	QHQECI.ASTLSGLVP...GtpvhqivdALLNM.......MFrkmnrGGQP.LTP.TTSGSSNSSASGVQDASIRLEVPAWDiLEATPF..V...................L.DAA................LTACAHGRLsPRE.LATglKDLADFLPATLatiasyfsaevtrgiwKPAFMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     192.61|      53|     136|    1028|    1092|       2
---------------------------------------------------------------------------
 1039- 1092 (90.81/64.45)	HSSDAVVQLLKSCFTSTLGLSSSHICSNGGVGALLGhGFG.SHFSGGISPVAPGI
 1098- 1126 (33.47/ 7.86)	HRSFRDVMFMTEEIVSLLMLSVREIASGG..........................
 1184- 1227 (68.32/31.63)	.........LPSWFLSVHGLGQEGGES.GGMVAMLG.GYAlAYFAVLCGTFAWGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.71|      57|     136|     194|     264|       3
---------------------------------------------------------------------------
  194-  264 (83.57/110.28)	WptRPQDM....EIDGHNSFSEMVIEHNEGLqkVNTAMAIeiiaeflqNKVTSRILFL..........ARRNMPSHwgGFIQRLQ
  331-  401 (89.14/71.05)	W..LPIDLyledSLDGSNVTANSSVEVLSGL..VKTLQAV........NGTTWHNTFLglwiaalrlvQRERDPSE..GPVPRLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.39|      14|      15|    1230|    1243|       4
---------------------------------------------------------------------------
 1230- 1243 (27.68/19.08)	ELPASRRRPKI.LGC
 1246- 1260 (21.71/13.15)	EFLASALDGKIsLGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.20|      49|     359|      91|     143|       5
---------------------------------------------------------------------------
   91-  143 (78.67/62.00)	LVLSLlstRVIPNRQH...QPGAYRLYMELLKRHAFSFTSHIH.GPSYQKIMkSIDD
  451-  503 (75.53/47.86)	LITSL...QLLGNHEHllaPPQAVSSVANQAAAKAIMFVSGLPvGNGYYESM.SVND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.84|      16|     160|     991|    1007|       6
---------------------------------------------------------------------------
  991- 1007 (28.99/22.40)	LTMVGPAlNSLGAGCPW
 1153- 1168 (28.85/17.06)	MTRVKLA.ASLGASLVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.31|      14|     131|      35|      49|       8
---------------------------------------------------------------------------
   16-   29 (23.86/10.09)	LWDGVLELTKSAQD
   36-   49 (23.45/ 9.79)	LWAMRLSASLSSAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17534 with Med33 domain of Kingdom Viridiplantae
Unable to open file!