<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17531

Description mediator of RNA polymerase II transcription subunit 15a isoform X9
SequenceMDTLKRHLPVSGQDGLQELRKIAIRFEEKIFTAATSQGDYLRKISLKMLTMETKSQNPPANSLPPNSTGNGNKPPDPGGHHPSDEDDGSEDDEFYYHSQDEVSEEADGPPPTSSPDNSTGNYGQ
Length124
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-1.186
Instability index58.48
Isoelectric point4.57
Molecular weight13558.45
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17531
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.23|      13|      49|      58|      70|       1
---------------------------------------------------------------------------
   58-   70 (26.39/ 9.65)	PPANSLPPNSTGN
   75-   87 (24.02/ 8.29)	PDPGGHHPSDEDD
  109-  121 (26.82/ 9.89)	PPPTSSPDNSTGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.66|      15|      20|      19|      37|       2
---------------------------------------------------------------------------
   19-   37 (20.23/27.76)	LRKIAIrfeeKIFTAAT.SQ
   41-   56 (22.43/16.90)	LRKISL....KMLTMETkSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17531 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRKISLKMLTMETKSQNPPANSLPPNSTGNGNKPPDPGGHHPSDEDDGSEDDEFYYHSQDEVSEEADGPPPTSSPDNSTGNYGQ
41
124










Molecular Recognition Features






MoRF SequenceStartStop




1) HHPSDEDDGSEDDEFYYHSQDEVSEEADGPPP
2) LRKIAIRFEEKIFTAATSQGDYLRKISLKMLTMETKSQNPPAN
80
19
111
61