<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17522

Description mediator of RNA polymerase II transcription subunit 15a-like
SequenceMLQQHPHSVLRQQQQPQQAAVIHPQQAPMQHQPILPPQQHQPQQPNAANMQQNQLIAQQSGVGDMQQQQRLLGQQNNLQTMQQQQHQQQLMAQQNNFSSMNQQQLGSQSNVSGLQQQQQQLLGAQSVNSSMQTTQHAVHMLQQSKIPVQQQPQQSTSSLLATQVQPSQSQPQPPQQQLMSQIQSQPSQLQQQLGMQQQPNSLQRDMQQRLQASGQPSSTLLQPQNVIDQQKQLYQRAVPDTSSTSLDSTSQTGNANGGDWQEVYQKPVGVFEFDWSFRGEIVA
Length283
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.03
Grand average of hydropathy-1.046
Instability index84.56
Isoelectric point6.69
Molecular weight31828.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17522
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.88|      33|      33|      43|      75|       1
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   28-   63 (56.83/13.70)	PMQHQPI....LPPQQhqpQQP.NAANMQ....QNQLIAQ.QSGVG
   64-   98 (46.41/ 9.42)	DMQQQQR....LLGQQ......nNLQTMQqqqhQQQLMAQ.QNNFS
  148-  187 (40.63/ 7.04)	VQQQPQQstssLLATQvqpSQS.QPQPPQ....Q.QLMSQiQSQPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.43|      29|      30|     189|     218|       3
---------------------------------------------------------------------------
  189-  210 (31.41/ 9.62)	.........LQQQLGMQQQPNSLQRDMQQRL
  212-  236 (27.78/ 8.99)	ASGQPSStlLQPQNVIDQQKQLYQR......
  237-  264 (45.24/15.50)	AVPDTSS..TSLD.STSQTGNANGGDWQEVY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17522 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MLQQHPHSVLRQQQQPQQAAVIHPQQAPMQHQPILPPQQHQPQQPNAANMQQNQLIAQQSGVGDMQQQQRLLGQQNNLQTMQQQQHQQQLMAQQNNFSSMNQQQLGSQSNVSGLQQQQQQLLGAQSVNSSMQTTQHAVHMLQQSKIPVQQQPQQSTSSLLATQVQPSQSQPQPPQQQLMSQIQSQPSQLQQQLGMQQQPNSLQRDMQQRLQASGQPSSTLLQPQNV
2) QQKQLYQRAVPDTSSTSLDSTSQTGNANGGDWQ
1
229
226
261










Molecular Recognition Features






MoRF SequenceStartStop




1) WQEVYQKP
260
267