<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17520

Description U-box domain-containing protein 34-like isoform X2
SequenceMRVRRHATSTLIKKPKKCSSLSVVTARVKIDIILEDTDVARALIEYTSHSAIENFVVGSSSKPGFLKRFKATDIPGYVSKGAPDFCNVYVISRGKIQSMRSALRAAPSRTTSTTSLRFQLAKYRGSIKSDTPEPQVFLPATSFNIYGKPPLIEPARRFQADEADIIRSPLPGRSGISGKSYGEIHLSDTDISFVSSERPSIDRMFPSLYDRLERDLITPSRMSCVSETDDINQRYDSSEQFDRRSLDVISPLDLSPISPDSDRLSNASQSVEEVEVEMRRLKLELKQTMEMYSTACKEALTAKQMAVELQRWKLEEERRLEDARLAEEAALAIAAKEKAKSRAAIEAAEAAKRIAELEAKKRIHAEMKVLQETEEKKKAFDALAQSDDRCRRYTIEDIEIATDFFAISRKIGEGGYGPVYKCYLDHTPAAIKVLRPDAAQGRSQFQKEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLEDRLFCRGNTPPLSWQLRFRIAAEVGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVVDNVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQMITARPPMGLTHLVERAIEKGTFTQMLDPAVPDWPIEEALCFAKLALKCAELRRKDRPDLGKEVLPELNRLRELAEETMYHTSINGSPASSPGHSQVSLQLEGDLPPALSGESSIISLTSKDQVLRKKIGLK
Length732
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.06
Grand average of hydropathy-0.342
Instability index52.15
Isoelectric point8.25
Molecular weight81834.98
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17520
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.21|      25|      28|     276|     300|       1
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  276-  300 (43.05/30.38)	VEMRRLKLELKQTMEMYSTACKEAL
  307-  331 (41.17/28.73)	VELQRWKLEEERRLEDARLAEEAAL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     380.43|     120|     383|      81|     205|       2
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   81-  205 (199.81/150.83)	GA.PDF.CNVY.VISRGkiqSMRSALRAAPSRTTSTTSLRFQLAKYRGS....IKSDTPEPQV...FLPATSF...NIYGKPPLIEPARRFQADEAD.IIRSPLPGRSGISgkSYGEIHLSDTDISFVSSERPSIDRMF
  465-  598 (180.62/123.20)	GAcPEYgCLVYeFMANG...SLEDRLFCRGNTPPLSWQLRFRIAAEVGTgllfLHQTKPEPLVhrdLKPANILldrNYVSKISDVGLARLVPPSVVDnVTQYRMTSTAGTF..CYIDPEYQQTGMLGVKSDIYSLGIMF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.36|      30|      30|     210|     239|       3
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  210-  239 (52.97/38.59)	DRLERDLITPSRMSCVS.ETDDINQRYDSSE
  242-  272 (45.39/31.87)	DRRSLDVISPLDLSPISpDSDRLSNASQSVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.41|      12|      17|     688|     699|       6
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  688-  699 (22.77/13.41)	PASSPGHSQVSL
  707-  718 (20.64/11.48)	PALSGESSIISL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17520 with Med32 domain of Kingdom Viridiplantae
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