<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17517

Description U-box domain-containing protein 34-like isoform X1
SequenceMTSVAVAVNGGSGGGRGRGSRRAVRWAVKNLMPKADRFVLVHVMPKITAIPTPSGEHIPVEELAENVVEMYMEDVKLKFEEIFVPFQELCKTRKVETLLLEDNDPATALLRYVSESGIKSLVLGSCSLNFVMRKLKGPGVPTTVLRGVAGICDIYIVSRDNIVTKPAGSSSTGDYGEVSGDNTEQISGLHSPHVEPKVQKSFGASSISQLSYLNSQILTNMDSSANADSSENSILDQERNHRNFGGDIETIKLCNSFCSTISGQSDMQAAEVEQLQLEIQNTVALYKRACEELVHAQNNVELVSSECLEEARRVNAGLEREEALRKIAAEDKAKYLEAIKEVQEAKKVLAKEANERKMAELNALKASLGKQTIVDALFSGDLRYRRYTRDEIEAATEFFSESNVIGEGGYGKVYKCSLDHTPVAVKVLSHDATGKKEEFLKEVEVLSQLRHPNVVLLLGACPESGCLVYEYLENGSLEEYIFHQNGKAPLPWFVRFQIVFEVACGLAFLHNSKPDPIVHRDLKPGNILLDRNNVSKIGDVGLAKIISDVVPDDITEYRESILAGTLCYMDPEYLRTGTIRPKSDLYAFAVITFQLLTGRQPNGLPSIIENAITNGSLPDILDKSVRDWPLAETEELAQIALRCSKLRCRDRPDLDTEVLPVLKRVSEVAKASLRIERENIYAPKHYFCPILQEIMDDPHIAADGFTYEHEAIKAWLKKHNVSPVTRLRLHHFTLTPNHTLHYAIQEWRSRVTFSHA
Length756
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.255
Instability index46.06
Isoelectric point5.80
Molecular weight84143.97
Publications
PubMed=27145194

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17517
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.03|      21|      24|     110|     133|       3
---------------------------------------------------------------------------
  113-  133 (35.81/31.39)	VSESGIKSLVL....GSCSLNFVMR
  135-  159 (32.22/17.54)	LKGPGVPTTVLrgvaGICDIYIVSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.92|      17|      22|     324|     340|       4
---------------------------------------------------------------------------
  324-  340 (27.34/19.58)	LRKIAAEDKAKYLEAIK
  349-  365 (27.58/19.82)	LAKEANERKMAELNALK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.56|      17|      25|      58|      74|       8
---------------------------------------------------------------------------
   58-   74 (29.39/22.50)	IPVEEL..AENVVEMYMED
   84-  102 (23.18/16.09)	VPFQELckTRKVETLLLED
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17517 with Med32 domain of Kingdom Viridiplantae
Unable to open file!