<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17516

Description U-box domain-containing protein 52-like isoform X2
SequenceMIHHFPPNDSSQVSMVKTTAVAIDKDKNSPHAVRWAMDHVAANKTNSLTVIHVRHKGSIQHRSYADQGGSDYGEPSDHSHDANDLIFMPYRSYSVRKGIQLKEVLLEDNDVPKALLDYIYKNCIESIVVGASTRNALSRKFKAYDVTASLMKSAPSFCSVHVISKGKILSLRRAPRPLSNTVTPPKHSLSSLVGLPPPPPDLGGEDMRPASRWRSAGSERMLHLERGNDTPIAAAARERARNSPTNLSMENMEFQNRAPRPSFGRDSPQSIDSSTDPSRGAMMFGSINFSIPSTMDTWGRQPPRDVEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELLQWKLGEARKFQEARLAEETAIAIAELEKAKCKAAIEAAEAAQMLAEKEAQRRKQAEMKARREAEQKDRALSAMTHNDVRYRKYSIEEIEKATEDFSQSMKIGEGGYGPVYKGLLDHTPVAIKVLRPDAAQGRKQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMNNGSLEDRLFRRGNSPPLSWRRRFQIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNFVTKISDVGLARLVPPSVVDSVTQYHLTSAAGTFCYIDPEYQQTGKLTTKSDIYSLGIMLLQIITAKPPMGIAHHVQRAIQRDTFAELLDPSVTDWPFDEALAFAKLSLKCAELRKKDRPDLGTVILPELNRLRELGRTSDASTSHGYSSSSQSQSHASRDSASSTHDSQGH
Length742
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.523
Instability index46.46
Isoelectric point9.03
Molecular weight82690.11
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17516
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.08|      26|      43|     328|     354|       1
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  328-  354 (41.07/39.90)	CKEAISAKNKArELLQWKLGEARKFQE
  373-  398 (43.01/35.48)	CKAAIEAAEAA.QMLAEKEAQRRKQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     172.45|      56|      81|       5|      64|       2
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    5-   64 (86.98/71.44)	FPPNDSSQV.SMVKTTAVAIDkDKNSPHAVrwaMDHVAANKTNSLTV.IHVRHKGSIQHRSY
   87-  144 (85.47/56.64)	FMPYRSYSVrKGIQLKEVLLE.DNDVPKAL...LDYIYKNCIESIVVgASTRNALSRKFKAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.69|      32|      44|     199|     237|       4
---------------------------------------------------------------------------
  199-  231 (56.23/23.60)	PPDLGGEDMRPASRW.R.SAGSERMLHLERGNDtP
  244-  277 (44.46/19.24)	PTNLSMENMEFQNRApRpSFGRDSPQSIDSSTD.P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17516 with Med32 domain of Kingdom Viridiplantae
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