<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17511

Description mediator of RNA polymerase II transcription subunit 15a-like
SequenceMDNNNWRPTPNQGSVGGAVGGVGGGAGEPTMDSGDWRAQLPPDSRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAIRFEEKIYTAATSQGDYLRKISLKMLTMETKSQNPTTNSLPSNSAGNSNKPPDSGVLGMQTQVHNQGQSLPIPLQSQARQQLLSQNIQNNVPSAGVQSSTSLPSTLPPVSGLNQAPISNVVGQNTNMQNISGNSQNPVGNSMGQGVPSTMFTNNQRQMQGRQQVVPLQQQQQSQNPQQYMHQQQLQQKLLKQKIQQGNIPHTLMQSHIQQQQQQQNLLQTNQLQSSQQSIMQSSSVIQPSVMQSSSLSVLQQNQQPSIQQATQNMLQQHSQSVLRQQQQPQQAAVIHPQQTPMQQQPILPTQQQQQLMGQQPNATNMQQNQIIAQPSSVGDMQQQQQQRLLGQQNNLQNMQQQQQQQQQHQLMAQQSNLSNMHQQLGSQSNVSGLQQQQLLGAQSVNSSMQTSQHSVHMLQQSKVPVQQQSQQSAANFLPTQGQLSQSQPQPPQQQLMSQIQSQPSQLQQQLGLQQQPNTLQRDMQQRLQASGQASGSLLQPQNVIDQQKQFYQRSVPDTSSSTSLLLCGLVSCSQVSFGFWCLCLI
Length612
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.02
Grand average of hydropathy-0.861
Instability index83.17
Isoelectric point9.88
Molecular weight67722.74
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17511
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     436.44|      54|      54|     339|     392|       1
---------------------------------------------------------------------------
  196-  247 (61.62/11.63)	VGQN.....TNM..qNISG...NS.QNPVGNSMGQGVPSTMFTN.NQR..Q.....MQgRQQVVPLQQQQQ.
  248-  292 (55.18/ 9.25)	.SQNPQQ........YMHQ...QQlQQKLLK..QKIQQGNIPHTlMQS..H.....IQ.QQ.....QQQQNL
  330-  382 (83.18/19.59)	...QPSI..QQA.tqNMLQ...QH.SQSVLRQQQQPQQAAVIHP.QQT..P.....MQ.QQPILPTQQQQQL
  383-  437 (72.98/15.82)	MGQQPNA..TNMqqnQIIA...QP.S.SVGDMQQQQQQ.RLLGQ.QNNlqN.....MQ.QQQ..QQQQQHQL
  438-  495 (52.73/ 8.35)	MAQQSNL..SNM.hqQLGS...QS.NVSGLQQQQLLGAQSVNSS.MQT..SqhsvhML.QQSKVPVQQQ...
  496-  537 (59.62/10.89)	..SQQSA..ANF.....LP...TQ.GQL...SQSQPQP.....P.QQQ..L.....MS.QIQSQPSQLQQQL
  539-  591 (51.14/ 7.76)	LQQQPNTlqRDM..qQRLQasgQA.SGSLL....QPQN..VI.D.QQK..Q.....FY.QRSVPDTSSSTSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.35|      27|      29|     134|     160|       2
---------------------------------------------------------------------------
  134-  160 (48.41/22.33)	MQTQVHNQG....QSLP..IPLQSQARQQLLSQ
  162-  194 (37.93/15.68)	IQNNVPSAGvqssTSLPstLPPVSGLNQAPISN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.47|      15|      21|     293|     307|       3
---------------------------------------------------------------------------
  293-  307 (26.09/11.90)	LQTNQLQSSQQSIMQ
  312-  326 (25.37/11.30)	IQPSVMQSSSLSVLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.79|      15|      19|      71|      89|       4
---------------------------------------------------------------------------
   71-   89 (20.38/33.88)	LRKIAIrfeeKIYTAAT.SQ
   93-  108 (22.41/19.98)	LRKISL....KMLTMETkSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.48|      14|      84|      29|      44|       5
---------------------------------------------------------------------------
    1-   14 (29.32/12.29)	MDNNNWRPTPNQGS
   31-   44 (28.16/11.71)	MDSGDWRAQLPPDS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17511 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LLKQKIQQGNIPHTLMQSHIQQQQQQQNLLQTNQLQS
2) MDNNNWRPTPNQGSVGGAVGGVGGGAGEPTMDSGDWRAQLPPDSRQRIVNKIMDTLKRHLPVSGQEGLHEL
3) QQQQLLGAQSVNSSMQTSQHSVHMLQQSKVPVQQQSQQSAANFLPTQGQLSQSQPQPPQQQLMSQIQ
4) QQQQPQQAAVIHPQQTPMQQQPILPTQQQQQLMGQQPNATNMQQNQIIAQPSSVGDMQQQQQQRLLGQQNNLQNMQQQQQQQQQHQLMAQQSNLSNMHQQLGSQSNVSG
5) RKISLKMLTMETKSQNPTTNSLPSNSAGNSNKPPDSGVLGMQTQVHNQGQSLPIPLQSQARQQLLSQNIQNNVPSAGVQSSTSLPSTLPPVSGLNQAPISNVVGQNTNMQNISGNSQNPVGNSMGQGVPSTMFTNNQRQMQGRQQVVPLQQQQQSQNPQQYMHQQQLQQ
264
1
461
351
94
300
71
527
459
262










Molecular Recognition Features






MoRF SequenceStartStop




NANANA