<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17503

Description ATP-dependent DNA helicase Q-like 4A
SequenceMTAEMCISGSNPGQGFKYNDKLLKVNWSQHANAHENFSCQNKFLSSNFLFSLSSQKPCAEGEMGTRPMACQSQNIRKLQSTQLEKAWHVLSNLQISCRNYIKPGKTVKVNNLGNSMSLSIGKRSISQSSFGIDRSSEHMQTHKNFSKSNGKVSESVSCMGNHFPSGNIRAMEAEKSLVGQSKIRASTVDHSHSQFLDRSFSSHTVHIGQVRESAAEVLAGDVDDDDLLENIDVDQIVEQYQSTCTPQPSISKLPPITPTLDEDNFMRQDGSGLPPELCSNCSHGLKLGLCPEAATHLQEIKDTLIVISNELIDNVNELSPEQIEKLRQDRLQLNKQIQQLERYLRANLVNAERQRSHYSASTAAAVSFQYGTPQATTFRTPMKFDAPVNLPNEVGGHERWNCPSVSFSSIDSFGVSSGHIEREPYIPKYVEVNYIEGSNDKKWSNVNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELSSDHFKYRLLYVTPEKVARSDVLLRHLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFQNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVIPKTKKCVDDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGSMDPTQRAFVQQQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSVEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGIEQSPLPSGSNRVNITNSGRILETNTENLLRMVSYCENDVDCRRLLQLIHFGEKFDSGNCKKTCDNCLKIKSFIEKDVTDITKQLVELVKSTLQQFSSSHILEVYRGSLSQFVKKHRHETLSLHGAGKHLAKGEASRILRHLVTENFLVEDVKKSDIYGSVSSVLKVNESKAKNLFLGGKTIILRFPSPVKASKLSKSVVTPAKGSLISGKLSPQINTPAQPQPEVDLNLSAILFSALKMLRTILLKESSEGYLAYHIFSNATMLHISKRIPRTKEELLDINGMGKTKVINYGDRVLQTIESTVNEYYRTEKNNSSNDSNDSIKRRRDTNRDGDSNAEDDDFTKSTGRSKKRVAKGQNKTAELSNYMEPDVYDQCIDDDDVEFYDCGFEINGSGSDIKDDENGGGGRVLPSWSAPGNGKDC
Length1227
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.482
Instability index48.16
Isoelectric point7.52
Molecular weight137357.77
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17503
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.46|      15|      17|     435|     449|       1
---------------------------------------------------------------------------
  435-  449 (28.98/18.91)	IEGSNDKKWSNVNF.P
  454-  469 (23.47/13.83)	LEANNKKVFGNHSFrP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     199.59|      56|     191|     670|     731|       2
---------------------------------------------------------------------------
  672-  731 (94.21/88.13)	CVDDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQE..CGHKAAFYHGSMdpTQraFVQQQ
  841-  864 (21.69/ 7.55)	....................YCENDVDCRRLL.QLIH..FGEK..FDSG.............
  866-  922 (83.70/57.74)	CKKTCDNCLKIKSFIEKDVTD.ITKQLVELVKSTLQQfsSSHILEVYRGSL..SQ..FVKKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     216.62|      94|     187|     318|     425|       3
---------------------------------------------------------------------------
    9-   67 (69.85/35.11)	GSNPGQGFKYNDKL.LKVNWSQHANAHENFSCQNKFLSSNFLFSLSSqkpcaeGEMGTRP....................................................................................................................................................................................................................................................................................................................
  318-  369 (31.79/35.47)	............................................................macqsqnirklqstqlekawhvlsnlqiscrnyikpgktvkvnnlgnsmslsigkrsisqssfgidrssehmqthknfsksngkvsesvscmgnhfpsgnirameaekslvgqskirastvdhshsqfldrsfsshtvhigqvresaaevlagdvddddllenidvdqiveqyqstctpqpsisklppitptldednfmrqdgsglppelcsncshglklglcpeaathlqeikdtlivisnelidnvneLSP......EQIEKLRQDRLQlnkqiqqlERYLRANLVNAERQRSHYSASTAaavSFQ
  371-  424 (74.02/50.01)	GTPQATTFRTPMKFdAPVNLPNEVGGHERWNCPSVSFSSIDSFGVSS......GHIEREP....................................................................................................................................................................................................................................................................................................................
  512-  558 (40.96/20.19)	...............................................................................................................................................................................................................................yipkyvevnyiegsndkkwsnvnfpwtkkleannkkvfgnhsfrpnqrevinatmsgydvfvlmptgggksltyqlpalicpgitlvISPlvsliqDQIMHLLQANIP........AAYLSANMEWTEQQEILRELSSD...HFK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.42|      11|      15|    1000|    1010|       5
---------------------------------------------------------------------------
 1000- 1010 (18.69/12.18)	KLSKSVVTPAK
 1017- 1027 (20.73/14.35)	KLSPQINTPAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.68|      22|      22|    1123|    1144|       6
---------------------------------------------------------------------------
 1123- 1144 (36.60/23.27)	NDSNDSIKR.RRDTNRDGDSNAE
 1146- 1168 (31.08/18.67)	DDFTKSTGRsKKRVAKGQNKTAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17503 with Med34 domain of Kingdom Viridiplantae
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