<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17500

Description pre-mRNA-processing protein 40C isoform X2
SequenceMASPAWLTQEIQPSASQAPVPGTSAVVSSGGPSTPTAAAPAPGAVTPTSKGLLGTASGSTQGPNQARFSNAPGYAVAPPLFSYNVLSNASTPPGSSQQSSSNSVINSNPPASPLLVQLPVSGVSSSSSPSFSYNISQSSVAFPSNQQFQSSGNSLTAVAQEAGTLSSASTIPQPVSLPADNSTSSTIPVSSISSLNQVTSWVPSAPSFFMPPGMPGTPGTPGPPGIAAPAQISSNLTVLSVATDSSSSAVPRPTMPTAPVLSSSAVQTANYPYASFPAMAAPPQGMWLQPSQMGGLPRSPFQPYPAAFPGPFPLPARGMALPSVPLPDSQPPGVTPLGTAPTISVSSAASGHMLAGTLRMQPELPPPDNRKNVEEVGTQDGAAVKEQLDAWTAHKTEAGVVYYYNAVTGESTYDKPLGFKGEHDKVHVQPTPVSTTSILGTDWVLVTTSDGKKYYYNSKTKISSWQIPSEVTELKKKQDGEHSISLPHANLSTEKGSAPISLNAPAISTGGRDAMALKALAVPGSSSALDMIKKKLQDSGSPITSSPNPAPSGIAASELNGSRAVDTTVKGLQSEDSRDKLKDANGDGNMSDSSSDSEDADSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLGEASEDIDHNTDYQTFRKKWGADPRFEVLDRKDREHLLNERVFPLKKAAEEKVQALRAAAATSFKSMLREKRDITANSRWSKVKDSLRNDSRYKSAKHEDREIFFNEYISELKAGEEQSEREAKAKREEQEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASFQALLVEIIKDPQASWTESKPKLEKDPQGRATNTDLDPSDIEKLFREHIKMLNERCVQEFRYLLAEVLTAEAAAQETEEGKTVLNSWSTAKRLLKPDPRYNKMPRKEREVLWRRYADEILRRQKVALDQKEEKKHVESKGRNSADSGRFLSGSRRRTHDRR
Length1011
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.06
Grand average of hydropathy-0.659
Instability index58.90
Isoelectric point9.03
Molecular weight109776.71
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17500
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     457.51|      66|      66|     671|     736|       1
---------------------------------------------------------------------------
  610-  666 (72.22/38.89)	......IIQFKEMLKE..RGVAPFSKWEKELPKIVFDPRFKA....IPSySA.....RRS..L........FEHYV..KTRAEEER
  671-  736 (107.28/61.20)	AAQKAAIEGFKQLLGEASEDIDHNTDYQTFRKKWGADPRFEV....LDR.KD.....REH..L........LNERVFPLKKAAEEK
  739-  802 (95.61/53.78)	ALRAAAATSFKSMLRE.KRDITANSRWSKVKDSLRNDSRYKS....AKH.ED.....REI..F........FNEYISEL.KAGEEQ
  807-  841 (41.00/19.02)	A..KA.....KR...EEQEKL......KE.RER.......EL....RKR.KE.....REE..Q........EMERV.RLK......
  843-  909 (63.89/33.59)	.RRKEAVASFQALLVEIIK..DPQASWTESKPKLEKDPQGRAtntdLDP.SDieklfREHikM........LNERCV.......QE
  914-  984 (77.51/42.26)	LAEVLTAEAAAQ...ETEEGKTVLNSWSTAKRLLKPDPRYNK....MPR.KE.....REV..LwrryadeiLRRQKVALDQKEEKK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     388.56|      55|      68|     158|     212|       3
---------------------------------------------------------------------------
    4-   42 (36.28/10.53)	......................PAWLTQ....EiQPSASQAPVPGT......................SAV........V.SSGGP..STPTAAAPaP
   48-  113 (33.05/ 8.95)	TSK..GLLGTA......SGSTQG...P.....N.QARFSNAPGYAVapplfsynvlsnastppgssqqSSSN......SViNSNPP..ASP.......
  158-  212 (93.23/38.33)	VAQEAGTLSSA......STIPQPVSLPA....D.NSTSSTIPVSSI......................SSLN......QV.TSWVP..SAPSFFMP.P
  213-  241 (28.07/ 6.52)	GM..PGT...P......GT.PGPPGIAA....P.AQISSNLTVLSV....................................................
  243-  283 (52.33/18.36)	......TDSSS......SAVPRP.TMP............TAPVLSS......................SAVQ.........TANYPyaSFPAMAAP.P
  289-  347 (63.76/23.95)	QPSQMGGLPRSpfqpypAAFPGPFPLPA....R.GMALPSVPLPD.......................SQPP......GV.TP.LG..TAPTISVS.S
  351-  398 (46.30/15.42)	GHMLAGTLRMQ......PELP.....PP....D.NRKN....VEEV......................GTQDgaavkeQL.DAW......TAHKTE.A
  400-  444 (35.52/10.16)	VVYYYNAVTGE......STYDKPLGF..kgehD.KVHVQPTPVSTT......................SILG.........TDWV.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.54|      14|      15|     480|     493|       4
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  480-  493 (24.85/18.52)	GEHSISLPHANLST
  496-  509 (23.70/17.20)	GSAPISLNAPAIST
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17500 with Med35 domain of Kingdom Viridiplantae
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