<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17498

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X2
SequenceMADSPQRSVWDSVIVLTREAQEKGSDPLLWAMQLSSYLNSAEASVSLPSVELSDVLVSYICWDNNVPIMWKFLDKALVLNIVPPMLVLALLSIRVIPSRHFQPAAYRLFMELLKRHAFMSLKSQLHAMNYQRVMQSIDTVLRLSQIFGLQTSEAGTIVVEFIFSIVWQLLDASLDDEGLLELTSEKKFRWEDTPQDMEVGAHDSNDEKQTEHLERVQKFNTVMAIELIGQFLKNKVTSKILYLARQYMSAHWEGFTQRLLLLGANSSALRNTKVITPEELLKLTSNIQMASLDCKLKSRRKFHDTLTMGPLASSASLCNEACRSALWLPLDFFLEDAVETTDLITRSTIESITVLVKVSRATNYTTWHDTFLGLWIAALRVVQRDRDPIEAPRPRLDPRLCLLLSITTLVVADLIEEDESALRDETQYGSSNQWKEKRVPGKCRHGLVSSLQMLGDFQGLLIPPQSTVYAANQAAAKAMFFISGVDVGNANSECVLMKDMPTNCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGNISEKPQGLSSKVPGWTSFMQGASFTQVMISALVSSPASRLEELEKIFEIAVNGSNDEKISVAMILCGASLIWGWNIQEHTAAFIIKLLSPPAPADYSGSDSHLIGYAPLLNVLIVGISSFDRLRIFSQHGLVPQLACSLMTICEVFGSCVPDVVWPAVKGKRITAHDVFSNAFILFLRMWRFNHPPIEHRAGDTYPVQSPLTPDYLLLIRNSHLGSPENGHWVQSKRRLSAVANSATADPIFLKSFPKLEVWFLQHRACIVSTLSEPVQGTPVHQIVDNLLKIMFRNTYEGSQSRNSVTSESSGFSGPKNDDTFPRLNDPAWNILEAIPFVAEASLKACSHGKISPRELATGLRILCDCLPASLASITSYLSAEVTRGVWKSVSMNGTDWPSPDANLSNFVEGMKKIVAFAGLDVPSVTSAGSSTPTLPLPLAALVTLTLTYKVGDHHLLLAGPALESLSSGCPWPCMPIVASLWTQKAKRWHDFFVIRASRTVILQNPNCVVKLLESCFTAILVLNASPVSSEGGVGVLLGHGIKPQFCGWSPWIIFLLVRQEIRETILITEKIVSLLMDSVKTIAFSGLPRERSEKLKTTKNTMRSGQVSLAAALTRVKLVASVGASLSWLCGGIGLIQSLFREVLPSWFVSAHSSELEGRSEGMIEILRGSALAYLAFTCGAFVWGIDSTSMAPNWRRRILGSHMEFIARALDGKISLGCDRATWHAYVLQFLSLMMNSAPTWLLETDVDVLKRLSRGLMQWNEGELALALLGIGGFATMGAVAELIIEKES
Length1321
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.08
Grand average of hydropathy0.121
Instability index43.51
Isoelectric point6.57
Molecular weight145974.29
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17498
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.43|      72|     401|     529|     673|       2
---------------------------------------------------------------------------
  496-  609 (93.88/178.24)	LMKDMPTNCSGNMRHLIVEACIARNLL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................dtsayfwpgyvngnisekpqglsskvpgwtsfmqgasFTQVMISALVSSPASRLE.ELEKIFEIaVNGSndeKISVAMILCGAsLIWG
  624-  650 (26.08/32.29)	LSPPAPADYSGSDSHLIGYAPLLNVLI..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1170- 1215 (60.47/14.91)	...........................vgissfdrlrifsqhglvpqlacslmticevfgscvpdvvwpavkgkritahdvfsnafilflrmwrfnhppiehragdtypvqspltpdylllirnshlgspenghwvqskrrlsavansatadpiflksfpklevwflqhracivstlsepvqgtpvhqivdnllkimfrntyegsqsrnsvtsessgfsgpknddtfprlndpawnileaipfvaeaslkacshgkisprelatglrilcdclpaslasitsylsaevtrgvwksvsmngtdwpspdanlsnfvegmkkivafagldvpsvtsagsstptlplplaalvtltltykvgdhhlllagpaleslssgcpwpcmpivaslwtqkakrwhdffvirasrtvilqnpncvvkllescftailvlnaspvsseggvgvllghgikpqfcgwspwiifllvrqeiretilitekivsllmdsvktiafsglprerseklkttkntmrsgqvslaaaltrvklvasvgaslswlcggigliqslFREVLPSWFVSAHSSELEgRSEGMIEI.LRGS...ALAYLAFTCGA.FVWG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.13|      37|     222|     444|     482|       4
---------------------------------------------------------------------------
  444-  482 (60.53/39.45)	RHGLV....SSLQMLGDFQGLLIPpqSTVYAA...NQAAAKAMF...FI
  664-  710 (55.60/30.06)	QHGLVpqlaCSLMTICEVFGSCVP..DVVWPAvkgKRITAHDVFsnaFI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.59|      21|      73|     732|     752|       8
---------------------------------------------------------------------------
  732-  752 (40.02/28.83)	PVQ.SPLTP..DYLL..LIRNSHLGS
  803-  828 (27.58/17.39)	PVQgTPVHQivDNLLkiMFRNTYEGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17498 with Med33 domain of Kingdom Viridiplantae
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