<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17496

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X2
SequenceMAVSVHTGIWDSVRELTRVAQRKGSDPLHWALQVSSNLNSAGVALPSAELADVLVSYICWDNNLPILWKFLEKALVLKIVPPMFVLALLSTRVIPHRKSWPVAYRLYLELLKRHAFALKFQINDLNYQKVMESIDDVLLLSQRFGMTPSEPGILVVQFIFSIVWQLLDATLDDEGLLELTSDEKSIWATKSQDMQIDYHDIYDEKRAELQERLQNENTVMSVDLIGQFLQNKVISRIIFLARRNMPTHWVHFIQRLRLLETNSSALRNSNALTPEALHQLTSDAPTVLSREYKTTSLQKFHAVMAFGSLSSSAGPCQGANRSALWLPLDLLLEDVMDGCLVNATSAIEIISGLIKTLQAINGTSWHDTFLALWIASLRLVQRERDPIEGPVPRLDTRLCILLSITTLVVADLIEEESAPVDETECGSTNHWKDKKVTGKCHNDLVSSLQILRDYQGLLTPPQSVVSAANQAAAKAMLFASGINVGSAYFECIGLKDMPINCSGNMRHLIVEACIARNLLDTSAYLWPGYVNGQINQIPHSVPAQAPSWSSFMKGAPLTPLLINALVSTPASSLAELEKIFDIAVKGTDDEKISAATILCGASLIRGWNIQEHTIHFIARLLSPPAPPKYCGNGSHLIGYAPMLNVLIVGIASIDCIQIFSLHGLVPQLACSLMPICEVFGSCVPDVPWVLTNGEEVSAHAVFSNAFILLLKLWRFNHPPLEHGVGETPTVGSQLTPEYLLLLRNSHLVSSGNVNKSRNRRRLSAVASLLSPQPVFVDSFPKLKAWHRQHQACIASTLSGLVHGTPVHKIVDGLLNMMFKKINRGGQSLTVTSGSSSSSGPGNEDTSLRPKLPSWDILEAVPFVVDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLFNVEEQIKKILATTGVDIPSLSAGGSSPSTLPLPLAAFVSLTITYKIDRASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASQTVFLHNSDAVVQLLKSCFAATLGLNDIPISSSGGVGALLGHGFGSHFCGGISPVAPEILYPVGFLERD
Length1095
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy0.165
Instability index40.66
Isoelectric point6.32
Molecular weight119438.58
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17496
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     217.52|      68|     104|     562|     629|       1
---------------------------------------------------------------------------
  562-  629 (115.03/76.25)	INALVSTPASSLAELEKIFDIAVKG.....TDDEKISAATILCGA..SLIRGWNIQEHTI.HFIAR..LLSPPAPPKY
  661-  738 (102.49/67.07)	LHGLVPQLACSLMPICEVFGSCVPDvpwvlTNGEEVSAHAVFSNAfiLLLKLWRFNHPPLeHGVGEtpTVGSQLTPEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     278.78|      91|     104|     857|     954|       2
---------------------------------------------------------------------------
  857-  954 (142.30/98.75)	LEAvpFVvdaALTACAH.GKLSPREL...ATGLKDLADFLP.ASLATIVSYFSAEVTRgvWKPAFMNGTDWPSPAANLFNVEEQIKKILATT.GV.DIPSLSAGG
  964- 1061 (136.48/77.84)	LAA..FV...SLTITYKiDRASERFLnlaGPALESLAAGCPwPCMPIVASLWTQKAKR..WSDFLVFSASQTVFLHNSDAVVQLLKSCFAATlGLnDIPISSSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.11|      24|      25|     747|     770|       9
---------------------------------------------------------------------------
  747-  770 (37.81/23.86)	LVSSGNVNKSRNRRRLSAVASLLS
  775-  798 (44.30/29.23)	FVDSFPKLKAWHRQHQACIASTLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17496 with Med33 domain of Kingdom Viridiplantae
Unable to open file!