<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17495

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X1
SequenceMADSPQRSVWDSVIVLTREAQEKGSDPLLWAMQLSSYLNSAEASVSLPSVELSDVLVSYICWDNNVPIMWKFLDKALVLNIVPPMLVLALLSIRVIPSRHFQPAAYRLFMELLKRHAFMSLKSQLHAMNYQRVMQSIDTVLRLSQIFGLQTSEAGTIVVEFIFSIVWQLLDASLDDEGLLELTSEKKFRWEDTPQDMEVGAHDSNDEKQTEHLERVQKFNTVMAIELIGQFLKNKVTSKILYLARQYMSAHWEGFTQRLLLLGANSSALRNTKVITPEELLKLTSNIQMASLDCKLKSRRKFHDTLTMGPLASSASLCNEACRSALWLPLDFFLEDAVETTDLITRSTIESITVLVKVSRATNYTTWHDTFLGLWIAALRVVQRDRDPIEAPRPRLDPRLCLLLSITTLVVADLIEEDESALRDETQYGSSNQWKEKRVPGKCRHGLVSSLQMLGDFQGLLIPPQSTVYAANQAAAKAMFFISGVDVGNANSECVLMKDMPTNCSGNMRHLIVEACIARNLLDTSAYFWPGYVNGNISEKPQGLSSKVPGWTSFMQGASFTQVMISALVSSPASRLEELEKIFEIAVNGSNDEKISVAMILCGASLIWGWNIQVVHSMQEHTAAFIIKLLSPPAPADYSGSDSHLIGYAPLLNVLIVGISSFDRLRIFSQHGLVPQLACSLMTICEVFGSCVPDVVWPAVKGKRITAHDVFSNAFILFLRMWRFNHPPIEHRAGDTYPVQSPLTPDYLLLIRNSHLGSPENGHWVQSKRRLSAVANSATADPIFLKSFPKLEVWFLQHRACIVSTLSEPVQGTPVHQIVDNLLKIMFRNTYEGSQSRNSVTSESSGFSGPKNDDTFPRLNDPAWNILEAIPFVAEASLKACSHGKISPRELATGLRILCDCLPASLASITSYLSAEVTRGVWKSVSMNGTDWPSPDANLSNFVEGMKKIVAFAGLDVPSVTSAGSSTPTLPLPLAALVTLTLTYKVGDHHLLLAGPALESLSSGCPWPCMPIVASLWTQKAKRWHDFFVIRASRTVILQNPNCVVKLLESCFTAILVLNASPVSSEGGVGVLLGHGIKPQFCGWSPWIIFLLVRQEIRETILITEKIVSLLMDSVKTIAFSGLPRERSEKLKTTKNTMRSGQVSLAAALTRVKLVASVGASLSWLCGGIGLIQSLFREVLPSWFVSAHSSELEGRSEGMIEILRGSALAYLAFTCGAFVWGIDSTSMAPNWRRRILGSHMEFIARALDGKISLGCDRATWHAYVLQFLSLMMNSAPTWLLETDVDVLKRLSRGLMQWNEGELALALLGIGGFATMGAVAELIIEKES
Length1327
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy0.123
Instability index43.24
Isoelectric point6.59
Molecular weight146656.09
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17495
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     146.16|      47|      49|    1154|    1202|       1
---------------------------------------------------------------------------
 1154- 1202 (75.93/51.84)	LVASVGASLSWLCGG.IGLIQSlfREVLPSWFVSAHSSELE..GRS.EGMIEI
 1203- 1253 (70.24/41.75)	LRGSALAYLAFTCGAfVWGIDS..TSMAPNWRRRILGSHMEfiARAlDGKISL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.10|      42|     384|     167|     208|       2
---------------------------------------------------------------------------
  167-  208 (73.08/38.65)	WQ..LLDASLDDEGLLELTSEKKFRWEDTPQDMEVGAHDSNDEK
  551-  594 (62.02/31.84)	WTsfMQGASFTQVMISALVSSPASRLEELEKIFEIAVNGSNDEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.59|      21|      73|     738|     758|       8
---------------------------------------------------------------------------
  738-  758 (40.02/25.66)	PVQ.SPLTP..DYLL..LIRNSHLGS
  809-  834 (27.58/15.43)	PVQgTPVHQivDNLLkiMFRNTYEGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17495 with Med33 domain of Kingdom Viridiplantae
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