<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17494

Description U-box domain-containing protein 35-like
SequenceMWLQKADALNKTRGNGFIAIAIDNEKGSQNALKWAADNLITKGQTIVLIHVVHGASPSPYGGSHSIICESNNSPRAQKLEKQTKDLFLIFHCYCARKDIPFLDVVLEDTDTAKALTEFVSYAAIESLVLGTSRHGFIRFKTSSIRSGVSKGAPDFCTVYAVSKRKVSSVRNASRPAPYVSPLLDHIKRLNNNTVKSSPALSKRRMDIRDKKSSFKPRNLYIDSVRSRVTRGGGRASNAKPHLDMSESDTDISFVSSGRSSTERTSTSLYDFSDSDKTSRFSTSTDQSLGSIRSGHRFNDLNLLGDQTSFSESSRTSSSWSSQNLDDVETEMRRLKLELKQTMDVYSTACREAVTAKQNAMELKHGKLEEERKLEEARLSEEAALATAEKEKARCRAAMEAAEAAKRIAELESQRRANAEIKALKEAEKIRKVLDNLAQSDIKYRIYTIEEIEMATEFFAQSRKIGEGGYGPVYRCYLDHTPVAVKLLRPDAAQGRSQFQQEIDILSCVRHPNMVLLLGACPEFGILVYEYMANGSLDDCLFRKGSGTVLSWQLRFRIASEIATGLLFLHQTKPEPLVHRDLKPGNILLDHNFVSKISDVGLARLVPAVAENVTQCCMTSTAGTFFYIDPEYQQTGMLGVKSDVYSLGIVLLQLLTAKSPMGLTHQVQNSIENGTFTEMLDPAVPDWPVEEALRFAKLALQCAELRRKDRPDLCKEVLPELFRMKELAEEKMNNILVGGSAYPSPNHSDALVQLDVMSDSELVNSGISKSRSSTSSLKE
Length778
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.378
Instability index49.93
Isoelectric point8.35
Molecular weight86418.24
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17494
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.12|      25|      36|     223|     258|       1
---------------------------------------------------------------------------
  232-  256 (44.41/29.06)	GGRASNAKPH...LD.......MSESDTDISFVSS
  260-  283 (23.65/12.31)	....STERTStslYD.......FSDSDKTSRFSTS
  737-  764 (32.06/ 8.74)	GGSAYPSPNH...SDalvqldvMSDSE....LVNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     364.15|     113|     138|     434|     555|       2
---------------------------------------------------------------------------
  434-  555 (184.44/167.28)	DNLAQSDIKyriytIEEIEMATEFFAQSRKIGEGGYGP.....VYRCYLDHTPVAVKLLRPDAAQ.GRSQFQQEIDILSCVrhpnMVLLLGACPEFGI..LVYEYMANGSLDDCLFRKGSGTVLSWQLRF
  574-  694 (179.72/138.22)	EPLVHRDLK.....PGNILLDHNFVSKISDVGLARLVPavaenVTQCCMTSTAGTFFYIDPEYQQtGMLGVKSDVYSLGIV....LLQLLTAKSPMGLthQVQNSIENGTFTEMLDPAVPDWPVEEALRF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.70|      15|      19|     381|     399|       5
---------------------------------------------------------------------------
  391-  410 (18.12/16.70)	KARCRAAMeaaeaAKRIAEL
  413-  428 (19.58/ 6.60)	QRRANAEI....kALKEAEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.84|      24|     609|      94|     117|       7
---------------------------------------------------------------------------
   94-  117 (42.52/29.00)	CA...RKDIPFL.DVVLEDTDTAKALTE
  701-  728 (34.32/22.05)	CAelrRKDRPDLcKEVLPELFRMKELAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17494 with Med32 domain of Kingdom Viridiplantae
Unable to open file!