<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17490

Description U-box domain-containing protein 32-like isoform X1
SequenceMGSFEAIEEEREFDVEETIFVAVGKNVEESKTTLFWAVQNFVGKKICVLHVHQPEHVVEPTDLNFSAKRLKQPICEELWEVEHQKQHELLDQYLLLLVQAGVEADKIWIEMNKVEKGIVDTIAAHNIRWLVMGGAAENHYSEELSELKSKKAFFVCQRAPISCHIWFVCKGCLIYTRGGSKDSVDLEIASPLLLLGSDIENEQLQNSVSESLTNEVRFLDAEGDGNELERISRSLSSQWSVCSSSSTNRVVGTSKLALWLTDEAKALENLCATETSRRKEIEEVLAREKQEVEKMRNQQDKFLKELQMVQDQKSILEAQLEESQSIVKELEEKIISAVKLLISFKEKRDKLRIENGNAVTELQKLRRVLNGEVPSFCSVQIPAFSFMEINEATQNFDPSWKIAEGRYGSVYKGILRHIHVAIKMLPSYGCQSQLDFQNEVELLSRVRHPNLLTLIGTCPESRSLVYEHVENGSLEDRLACKGNTCPLPWQIRTKIAADICSTLIFLHSNKPHIIHGNLKPSTVLLDANFVCKLGDLGIFRMVPQNGHPPHTNQLCNNPEETSLYMDPDYLETGKLTPASDVYSFGLILLRLLTGRPILRILKDVECALENENLEAVLDVSAGDWPLEQAKQLAQLGLRCCETNQVNRPDLVSEIWSLLEQMRASCIASASCLVSKKSGKIPSNFMCPIYQEVMTDPQIAADGYTYESEAIRGWFESGHNTSPMTNLKLQHCDLVPNYALQNAILEWQQRL
Length750
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.265
Instability index45.18
Isoelectric point5.26
Molecular weight84812.00
Publications
PubMed=27145194

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17490
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     424.86|     108|     228|     166|     273|       1
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  166-  273 (179.64/123.00)	WFVCKGCLIYTRGGS.KDSVDLEIASPLL..LLGSDIENEQL..QNSVSESLTNEVR...FLDAEGDGN...ELERISRSLSSQW.SVCSSSSTNRVV..GTSKLALWLTDEA.KALENLCAT
  301-  398 (108.02/70.80)	KFLKELQMVQDQK.S.ILEAQLEESQSIVkeLEEKIISAVKL..LISFKEK.RDKLR......IE.NGNavtELQKLRRVLNGEVpSFCS.......V..QIPAFSFMEINEAtQNFDP....
  400-  502 (137.20/92.07)	WKIAEG.....RYGSvYKGILRHIHVAIK..MLPSYGCQSQLdfQNEV..ELLSRVRhpnLLTLIGTCP...E....SRSLVYE..HVENGSLEDRLAckGNTCPLPWQI.RT.KIAADICST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.41|      10|      18|     102|     111|       6
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  102-  111 (18.68/11.42)	VEADKI.WIEM
  122-  132 (14.73/ 7.56)	IAAHNIrWLVM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17490 with Med32 domain of Kingdom Viridiplantae
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