<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17488

Description mediator of RNA polymerase II transcription subunit 8 isoform X2
SequenceMEGVVVQNQSQQQQQQQQQQQQQQQPERLNQAVQQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVNPKNVNAENSTILPVMLSSKLLPEMEMDDNSKREQLLHGMQNLPISSQIEKLKARIDMIGAACESAEKVLADTRKAYCFGTRQGPSIAPTLDKGQAAKIHEQENLLRAAVHLGEGLRMSGEQRQITPALPLHLVDVVTGGDGMQSFADTSGMYLKNNPMSSSNISGQGTLLSASASQLIGRSAASPGATSATSFDNTAASPLQYANSPRSGTNMMNTPSPQPQTPQQQQQQQQQQRQKLMQIPQHQPQILAQQQFRQSAMQGLAQNQLPQLHDLQGQAQQKFQSMQFSQAMGHQQFQRQLPSGHVQHGIGQSQLNQGNQMNRHLSQFSGNANSALFNAAQATSNTQMIPNISATMSSQSLIPRMQFGLSGSNPQRSHASQILSDQMFNMGAANPSGMMPIQQQQQQQQQQHGSQTAFGNMQPNAQNLQPGMVALQNTQQNLSNFSQQRQQNPQ
Length555
PositionHead
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.04
Grand average of hydropathy-0.711
Instability index57.86
Isoelectric point9.28
Molecular weight61238.93
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17488
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.73|      19|      24|     316|     337|       2
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  316-  334 (40.57/ 9.89)	MMNTPSPQPQTPQQQQQQQ
  341-  359 (33.16/ 9.58)	LMQIPQHQPQILAQQQFRQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     107.09|      25|      25|     398|     422|       3
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  367-  389 (34.95/13.35)	.QNQLPQLHDLQGQ.AQQKF.QSMQF
  398-  422 (46.70/20.48)	FQRQLPSGHVQHGI.GQSQLNQGNQM
  429-  449 (25.45/ 7.59)	F.....SGNANSALfNAAQATSNTQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.70|      19|      25|     264|     288|       4
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  264-  288 (22.93/28.22)	SNISGQGTllsaSASQLigRSAASP
  292-  310 (34.77/21.13)	SATSFDNT....AASPL..QYANSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.38|      31|      42|     467|     508|       5
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  477-  508 (53.45/33.42)	RSHASQILSDQM.FNMGAANPsGMMPIQQQQQQ
  511-  542 (52.93/15.86)	QQHGSQTAFGNMqPNAQNLQP.GMVALQNTQQN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17488 with Med8 domain of Kingdom Viridiplantae
Unable to open file!