<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17487

Description mediator of RNA polymerase II transcription subunit 8 isoform X3
SequenceMEGVVVQNQSQQQQQQQQQQQQQQQPERLNQAVQQQLNLEAVKTRAISLFKAISRILEDFDAYARTNTTPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVNPKNVNAENSTILPVMLSSKLLPEMEMDDNSKREQLLHGMQNLPISSQIEKLKARIDMIGAACESAEKVLADTRKAYCFGTRQGPSIAPTLDKGQAAKIHEQENLLRAAVHLGEGLRMSGEQRQITPALPLHLVDVVTGGDGMQSFADTSGMYLKNNPMSSSNISGQGTLLSASASQLIGRSAASPGATSATSFDNTAASPLQYANSPRSGTNMMNTPSPQPQTPQQQQQQQQQQRQKLMQIPQHQPQILAQQQFRQSAMQGLAQNQLPQLHDLQGQAQQKFQSIPNISATMSSQSLIPRMQFGLSGSNPQRSHASQILSDQMFNMGAANPSGMMPIQQQQQQQQQQHGSQTAFGNMQPNAQNLQPGMVALQNTQQNLSNFSQQRQQNPQ
Length492
PositionHead
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.04
Grand average of hydropathy-0.695
Instability index61.94
Isoelectric point8.98
Molecular weight54329.43
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17487
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     442.67|     132|     313|       1|     143|       1
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    3-  137 (214.35/84.34)	GVVVQN....QSQQQQQQQQQQQQQQQ.....PERLNQAV.QQQLNLEAVKTRAISLFKA....ISRILEDF.DAYA.RTNTTPKWQDI......L..GQYSMVNLELFNIVDEIKKVSKAFvvNPKNVNAEN..STILPVmLSSKLL...............PEMEMDDNSKREQ
  146-  264 (106.84/31.43)	......................................PI.SSQ..IEKLKAR.IDMIGAacesAEKVLADTrKAYCfGTRQGPSIAPT......LdkGQAAKIH.EQENLLRAAVHLGEGL.....RMSGEQ..RQITPA.LPLHLVdvvtggdgmqsfadtSGMYLKNNPMSSS
  313-  423 (121.49/45.07)	GTNMMNtpspQPQTPQQQQQQQQQQRQklmqiPQHQPQILaQQQFRQSAMQGLAQNQLPQ........LHDL.QGQA.....QQKFQSIpnisatM..SSQSLIPRMQFGLSG.....S.....NPQRSHASQilSD.......................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.79|      10|      23|     277|     288|       3
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  277-  288 (13.05/13.66)	ASQLigRSAASP
  301-  310 (19.74/11.73)	ASPL..QYANSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17487 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASQLIGRSAASPGATSATSFDNTAASPLQYANSPRSGTNMMNTPSPQPQTPQQQQQQQQQQRQKLMQIPQHQPQILAQQQFRQSAMQGLAQNQLPQLHDLQGQAQQKFQSIPNISATMSSQSLIPRMQFGLSGSNPQRSHASQILSDQMFNMGAANPSGMMPIQQQQQQQQQQHGSQTAFGNMQPNAQNLQPGMVALQNTQQNLSNFSQQRQQNPQ
277
492










Molecular Recognition Features






MoRF SequenceStartStop




NANANA