<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17482
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKLGGLHQISWFQFLPHEADLSCLPDKSVKVEQKDTAMLSVLSSHLQLQKEGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHSSVVDTAQSAVSRLRVIASGIWLAPGDSEEVASALSQALRNCIERTLAGLSYVRFGDVFSKYCPSQSEEMFRRGQPTVEFVFAATEEAVFVHAIISAKHTRTLSGGDIEGALQRSSNNSGYRLPVIVSPHGIRGRLTGCCPGDLVKQVYLCSGKFKTPNGFIGLPYHVSQDAGCQMRGQSCYVEVTLGCPKSVSDNPLQSNSDAMRNFPTNNVPESADVGRGDKKGSPDQLPVHEKTFIYPAEAVLVPVLHTSFARSSLKRFWLQNWIGPSLPGSCFFMHCGSNMDFVEGSWTEINGIHAKHGYNSSSNSNSSSISTISSSSSDSDHKMTTGASELEGDADSLTCRQSGLSSNHQLENGPILGSKRPRTGMTDSFGQVGTETNALVQEAYKSDFISMEVDNSAITGVASEQIGSDWDWDDDDRGMVMDIQALLSEFGDFGDFFENDGLPFGEPPGTAESQALMFSAPDCGDVGPSPVGMMDVSDQVLLPVGFQSFESFDPPPPLAQEEYLSKSQEVTNNSLSSGLVNHTPASSTGEFDHIIKAEALLTFAPEYGAVETPTSEFSSSIFRSPYFPKSRREESSNSSSNNYIYGATPPSSPCFDGSDEKTSLPINSKPLSGRNDVNAVVHSKKYYTHVERGKERHDKRFLAGNNSVAMSEGVAPTPFSSLNSTNAVKSSLRKVSEGTLELAPFLQSTRTVFATEVECLMFQASMCRIRHTLLSSSTSMPINLSRLTGSNVFNQLPGDQSTLTDNTSSKYEVKKKETIPIRIAGDTDGILDGHLNAPVGVWRSVGVPKVPKLSNSPSMEISPSLPHNSFNEEAILSFGQMQPLQELLDGMALLVQQATSSVDLTLDGDCGDGAYGWLALQEQWKRGFSCGPFMMHAGCGGTLASCHALDIAGVELVDPLSADVHASSVINLLQSDIKTALKSAFSILDGPLSVNDWCKGRNPSVDAGSTGDGFSAESSISECRDSSSTVGEPMSPSQSSAGGSSSLKESEQQQSTRLRPTLLVLPLPAILVGYQDDWLKTSASSLQLWEKAPLEPYALQKPITYNVICPDIDPLTSAAADFFQQLGTVYETCKLGSHSPQSLGNQMEIDSAKWSSSGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLTSYLKSLSKALKGLKLGPCSSTNPKEGSSGPCMVIYVVCPFPEPTAVLQTVVESSVAVGSVILQSDRERRSILHSQVGKALSCSAAVDEATISNILVLSGFSIPKLVLQIVTVDAIFRVTSPSLNELVILKETAFTVYNKARRISRGSSNDMVQSSSISSRSPSVLTQMSSPMSGMWKDCVGPRITGHSLPREGEIDASLRNNSWDNSWQTRTGGLSCDPIRTGDYTVQDEIRYMFEPLFILAEPGSVENGVSPVFSGNIVSESTKTLSDDSSGGFMQGAGSAGSADAGSCSHLDGSETDGFGSSHQKTPPSLHCCYGWTEDWRWLVSIWTDSRGELLDSHVFPFGGISSRQDTKGLQCLFVQVLQQGCQILQACSSPDIGVAKPRDFVIARIGSFFELEYLEWQKAINSVGGSEVKKWPLQLRRSMRDGIPASSNSTSLQQQEMSLIQERTLPTSPSPLYNPHAKATGFIKGGLGQPAARKQLMGGQTLVDNSRGLLQWVQSISFVAISVDHSLHLVFQADSPSPGGAQGGSGMGPSGYLEGFTPVKSLGSTSASYVLIPSPSMHFLPATPLQLPMCLTAESPPLAHLLHSKGSAIPLSTGFVVSKAIPSMRKDYRSNLKEEWPSVLCINLIDYYGGTSIIQDKSVRGINKQGGRSLSSEAKDFEIETHLVLESVAAELHALSWMTVSPAYLERRTALPFHCDMVLRLRRLLHFADKELSRQPGKLHV |
Length | 1962 |
Position | Kinase |
Organism | Juglans regia (English walnut) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Fagales> Juglandaceae> Juglans.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.227 |
Instability index | 53.77 |
Isoelectric point | 5.43 |
Molecular weight | 211826.84 |
Publications | PubMed=27145194
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP17482
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 128.55| 30| 62| 602| 631| 1
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602- 631 (50.30/26.49) YLSKS.QEVTNNSLSSGLV.NHTPASSTGEF.D
632- 658 (34.90/15.89) HIIKA.EALLTFAPEYGAV..ETP...TSEFsS
665- 695 (43.34/21.70) YFPKSrREESSNSSSNNYIyGATPPSS.PCF.D
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 89.28| 31| 62| 2| 53| 2
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2- 43 (45.52/43.61) WTNVFkLG......GLHqiswfqflPHE.ADLS.CLPDKSVKVeqKDTAM
62- 101 (43.76/28.54) WTNSF.VGpwdpsqGLH.......nPDEkIKLWlFLPGRHSSV..VDTAQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.55| 44| 330| 1026| 1074| 3
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1027- 1072 (74.11/45.09) LDGPLSVNDWCKGRNPSVDAGStgDGFSAESSISE.CR...DSSSTVGEP
1138- 1185 (67.45/33.55) LQKPITYNVICPDIDPLTSAAA..DFFQQLGTVYEtCKlgsHSPQSLGNQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 161.67| 39| 438| 1074| 1117| 4
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399- 423 (28.77/ 8.15) SSSNSNSSSISTISSSSSD...SDHKMT...................
1074- 1117 (61.00/36.27) SPSQSSAGGSSSLKESEQQ...QSTRLRPtllvlPLPAILVGYQDDW
1515- 1556 (71.90/34.59) SAGSADAGSCSHLDGSETDgfgSSHQKTP.....PSLHCCYGWTEDW
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 347.17| 134| 576| 1196| 1362| 5
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1216- 1362 (192.93/162.21) LVGSISDYFLSLSNGWDLTSYLKSLSKAlKGLKLGPCSSTNPKEGSSGpcmviYVVCPFPEPTA...VL..QTVVESS............................................................................................................................................vavGSVILQsDRERRSIlHSQVGKALScSAAVDeATISNILVLSGFSIPKLVLQIVTVDAIF...RVTSPSLNELVI
1656- 1727 (74.09/26.89) LRRSMRDGIPASSNSTSLQQQEMSLIQE.RTLPTSPSPLYNPHAKATG.....FIKGGLGQPAArkqLMggQTLVDNS.........................................................................................................................................................................................................................
1871- 1940 (80.15/32.37) ..............................................................................rgllqwvqsisfvaisvdhslhlvfqadspspggaqggsgmgpsgylegftpvkslgstsasyvlipspsmhflpatplqlpmcltaespplahllhskgsaiplstgfvvskaipsmrkdyrsnlkeewpsvlcinlidyygGTSIIQ.DKSVRGI.NKQGGRSLS.SEAKD.FEIETHLVLESVAAELHALSWMTVSPAYlerRTALPFHCDMVL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 81.19| 19| 53| 517| 535| 6
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517- 535 (36.77/22.88) GM.......VMDI..QALLS.EFGDFGDF
540- 565 (22.24/10.35) GLpfgeppgTAES..QALMF.SAPDCGDV
571- 591 (22.18/10.30) GM........MDVsdQVLLPvGFQSFESF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 45.76| 14| 29| 431| 446| 8
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431- 446 (19.50/15.92) GDADSLTcrQSGLSSN
463- 476 (26.26/13.46) GMTDSFG..QVGTETN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 42.79| 10| 536| 361| 370| 9
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361- 370 (21.91/11.63) IGPSLPGSCF
900- 909 (20.88/10.64) ISPSLPHNSF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 155.11| 42| 636| 933| 993| 10
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229- 275 (69.00/26.48) LTGCCpGDLVKQVYLCSGKFKtpNGFIGLPYHVsqDAGCQMRGQSCY
945- 986 (86.11/68.10) LDGDC.GDGAYGWLALQEQWK..RGFSCGPFMM..HAGCGGTLASCH
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 146.08| 44| 591| 800| 865| 11
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701- 744 (76.97/43.84) TSLPINSKPLSGRNDVNAVVHSKKYYTHVERGKERHDKR.....FLAGN
817- 865 (69.11/49.66) TSMPINLSRLTGSNVFNQLPGDQSTLTDNTSSKYEVKKKetipiRIAGD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 94.58| 28| 636| 113| 140| 12
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113- 140 (48.35/33.11) GIWLAPGDSEEVASALSQALRNCIERTL
752- 779 (46.23/31.27) GVAPTPFSSLNSTNAVKSSLRKVSEGTL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 180.65| 58| 1307| 142| 204| 13
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142- 204 (95.42/80.18) GLS..YVRFGD.VFSKYCPSQSEEMFRRGQP.TVEfvfaATEEAVFVHAIISaKHTRTL....SGGDIEGA
1448- 1513 (85.23/57.42) GLScdPIRTGDyTVQDEIRYMFEPLFILAEPgSVE....NGVSPVFSGNIVS.ESTKTLsddsSGGFMQGA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 83.13| 26| 899| 868| 898| 16
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868- 898 (38.88/35.75) GILDGHlnAPVgvwRSVGVPKVPK.LSNSPSM
1772- 1798 (44.24/24.27) GYLEGF..TPV...KSLGSTSASYvLIPSPSM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 125.62| 37| 446| 1378| 1414| 19
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1378- 1414 (65.65/30.33) SRGSSNDMVQSSSISSRSPSVLTQMSSPMSGMWKD..CV
1825- 1863 (59.97/27.12) SKGSAIPLSTGFVVSKAIPSMRKDYRSNLKEEWPSvlCI
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