<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17479

Description mediator of RNA polymerase II transcription subunit 34 isoform X3
SequenceMETQLILEELLHVEVEIQDVQDHINRLLERQEKLYERQTELKALLEACEGSGDPVADGASATVENWSGPFEWDSKADDVRFNVFGIPTYRENQREIINAIMSGRDVVVIMAAGGGKSLCYQLPAVLHDGVALVVSPLLSLIQDQVMGLTALGIPAYMLTSTTSKEDEKFIYRALEKGEENLKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPVVALTATATQKVQTDLMEMLHISRCVKFVSTVNRPNLFYMVREKSSVSKVVIDEIAEFIQESYPNNESGIVYCFTRKECEQVAKELRERGISADYYHADMDVNARERVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPADVSRVPWSSMRTPVCRISMT
Length439
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.253
Instability index38.21
Isoelectric point5.90
Molecular weight49738.46
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17479
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.71|      36|     195|     185|     230|       1
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  185-  230 (48.73/56.27)	YVTPEKISKSkrFMSKLEKCHHAGRLSLISidEahcCSQWghdFRP
  383-  418 (67.98/41.09)	FVIHHSLSKS..METYYQESGRAGRDGLPS..E...CLLY...FRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.46|      14|      15|      19|      32|       3
---------------------------------------------------------------------------
   19-   32 (23.77/16.52)	DVQDHINRLLERQE
   36-   49 (22.69/15.47)	ERQTELKALLEACE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17479 with Med34 domain of Kingdom Viridiplantae
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