<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17473

Description U-box domain-containing protein 35-like isoform X2
SequenceMDRSEVEADENLTPLPSSSSVVAVAVDGKRKSKHIVQWSLEKFVPEGNAIFKLIHVRARIMGNSIPISQVREEVAAAYIKDIEWQTSEMLLPYKKLCIQKKVEVDVIVIESNDVANAIAEEVAKHGINKLVIGASSRGLFTRKLKGVSSRIAVCAPEFCTVYAVSKGKLSSIRPSSIETNGSIRDDSSETSCSTTNSSSYTFSSQIDHGSVALNSHFDSPSLPMQRFQALATINQTLLKTRTSSVESSHFRCQSLDIREGKDDLSSCATNADSGHALSRTSSCKSLPTDNQSWISDQASTSDMLTEYLSSESQENLNFELEKLRMELRHARGMYAIAQSETNDASLKLNNLNKCRLEEAMKLKEINLKEEMAKKLARQEKERYEAAKREVTHVRQSTERETSQRKEAEMKAIHDAKEKEKLENALVGPVHQYRKFTWDEIVSATSFFSEDLKIGMGAYGSVYKCSFHHTTAAVKVLHSKESRKTKQFQQELKILSEIRHPHLLLLLGACIDHGCLVYEYMESGSLEDRLLRKNGTPPIPWFERFRIAWEVASVLAFLHNAKPKPVIHRDLKPANILLDHNLVSKIGDVGLSTIVHTDPTSMSTLYKDTGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAMALAHVVETALSDGLLSEILDQEAGNWPVEETKQLAELGLSCAELRRRDRPDLKDKVLPALERLKEVGDRARGLISRVQSAPPNHLICPILKDVMTDPCVAADGYTYDRRAIELWLEVNDKSPMTNMPLPHNNLIPNYTLLSAIMEFKSRGQ
Length801
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.365
Instability index41.81
Isoelectric point6.80
Molecular weight89509.17
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17473
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.66|      33|      36|     215|     247|       1
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  215-  247 (57.26/34.22)	SHFDSPSLPMQR....FQALAT.INQTLLKTRTSSVES
  248-  285 (49.40/28.62)	SHFRCQSLDIREgkddLSSCATnADSGHALSRTSSCKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.99|      18|      30|     319|     348|       2
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  309-  326 (29.62/38.13)	SSESQENLNF.ELEKLRME
  339-  357 (25.37/ 6.87)	SETNDASLKLnNLNKCRLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.07|      72|     581|     132|     206|       3
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  132-  206 (107.45/87.76)	IGASSRGLFTRkLKGVSSRIAVCaPEFCTVYA...VSKGKLSSIRpSSIETNGSIRDDSSETSCSTTNSS...SYTFSSQI
  716-  793 (116.62/80.38)	VGDRARGLISR.VQSAPPNHLIC.PILKDVMTdpcVAADGYTYDR.RAIELWLEVNDKSPMTNMPLPHNNlipNYTLLSAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17473 with Med32 domain of Kingdom Viridiplantae
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