<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17469

Description U-box domain-containing protein 33-like
SequenceMAVLSSVPALTQRTDSLRVLDIGVSGSMGSRRENARESMARMIEDIIYVAVSKDVKESKSTVIWTLQNSGGKKVCIIHVHQPAQMIPMMGTKFPASSMKEQEVRAYRELERQNMQKILAEYLLICRRMGVRAEKLHTEMDSIEKGIVELISQHGIRKLVIGAAADKHYSRKMMDLKSKKAIYVCQQAPLSCHIQFVCKGNLIHTREASLHGADMEVVSSLPQASPNIETGQLNHLRLRSATTGHNTHVNLTNPAQDLLRRVRSADIERYGASEKKISFPANAEGFSSLHTSEMYVFSGRSSSLGSGHSTSSSTDMTLVPCQETEESGSGLDLSAVPQSKEDFCHSSPPSVLDGSIDDTFYNHLEKAMAETINAKQEAFQETVNRGKAEKNAIDAIRRAKASESLYVEELKQRKEIEEALAKEKEEFIKMKNQHEKVMEELQIALDQKSSLEMQIATSEQMVKELEQKIIAAVDLLQNYKKEQVELQTGRDNALKEAEELRKRQGETSSKCMHQFFSEFCFSELDEATRNFDPALMIGEGGYGTIHKGVLRHTQVAVKMLNSHSLQGPSEFQQEVDVLSKLRHPNIVTLIGACQEAWALIYEYLPNGSLEDRLSCKDNSPPLSWQIRIRVAAELCSALIFLHSCEPNSIIHGDLKPANVLLDANFVSKLSDFGICRLLSHDRSSDMNSTEVWRTDPKGTFVYMDPEFLSTGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDSGKLKALLDPLAGDWPFVQAEQLTHLALRCCEMNRKNRPDLSSDVWRVLEPMRASCGGSSLFRFGSGERCQPPTYFLCPIFHEVMQDPHVAADGFTYEAEALRGWLDSGRDTSPMTNLKLEHCNLVPNHALRSAIQEWLQQQ
Length888
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.06
Grand average of hydropathy-0.384
Instability index47.82
Isoelectric point6.12
Molecular weight99407.23
Publications
PubMed=27145194

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17469
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.45|      36|      54|     261|     298|       1
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  261-  298 (57.03/40.36)	VRSADIERYGASEKKISFPANAEGFSslHTSEMYVFSG
  318-  353 (64.42/39.95)	VPCQETEESGSGLDLSAVPQSKEDFC..HSSPPSVLDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.97|      33|     101|     661|     695|       2
---------------------------------------------------------------------------
  661-  695 (52.65/40.78)	DANFVS..KLSDFGI..CRLLSHDRsSDMnSTEVWRT.DP
  760-  797 (50.33/30.03)	DWPFVQaeQLTHLALrcCEMNRKNR.PDL.SSDVWRVlEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     521.74|     177|     362|      31|     229|       3
---------------------------------------------------------------------------
   31-  229 (259.89/274.83)	RRENARESMarMIEDI.....IYVAVSKD......VKESKSTVIWTLQNSGGKKVCI.IHVHQPAQMIPMMgtkfpassmkEQEVRAYRELeRQNMQKILAEyLLICRRMGVR.AEKLHTEM.DSIEKGIVELISQHGIRKLvigAAADKHYSRKMMdlKSKKAIYVCQQAPLScHIQFVCKGNLIHTREA.SLHGADMEVVSSLPQasPNIET
  396-  587 (261.85/207.86)	RRAKASESL..YVEELkqrkeIEEALAKEkeefikMKNQHEKVMEELQIALDQKSSLeMQIATSEQMVKEL..........EQKIIAAVDL.LQNYKKEQVE.LQTGRDNALKeAEELRKRQgETSSKCMHQFFSEFCFSEL...DEATRNFDPALM..IGEGGYGTIHKGVLR.HTQVAVKMLNSHSLQGpSEFQQEVDVLSKLRH..PNIVT
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17469 with Med32 domain of Kingdom Viridiplantae
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