<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17466

Description mediator of RNA polymerase II transcription subunit 12-like
SequenceMQRYHAASCTNAVSNSALGGPLTRDTARADSSPLSANFALNSRQLSQQTPYKLKCDKEPLNSRIGPPDFHPQTTTCPEETLTRDYVQSGYRETIEGIEEAREISLTQVQAFSKPVIVKCKEAIRKRLRAINESRAQKRKAGQVYDVPLSGSQLTKPGIFPEQRACGEDSRKKWIEGLSQPHKQLRFLADHVPHGFRRKSLFEILIRNNVSLLRATWFIKVTYLNQVRPGSASISSGAPDKTQLSRTELWTKDVIDYMQYLLDDFFSRNNSHSTYSRDQSPQVPYAGSLQHRSDPASAALDGEEPSLHFKWWYMTRLLQWHNAEGLLLPSLIIDWVLNQLQEKDLLEILQFLLPIIYGVLETVVLSQTYVHGLFGVAIRFIRDPSPGGSDLVDNSRKAYTISALVEMLRYLIEAVPDTFVALDCFPLQPYVVSYAVSDGNFISKVSGDAEKLKNGCTEVPSMHKSNAIDAQYQSLAFNNVVSSIQNCAETLAKASSPGYLGHNLAKAVQSLDKSLVHGDVREASKLLFEDHWDGAIAKSWVAEVSQCLRSSLKWIGTVNLSFICSIFFLCEWATCDYRDFRTVAPTNIKFSGRKDFCQVYIAVRILKLKIKDLQRSSRGKSGSTLGVSGIGGGSSQQNSARTSVGNVFEINDDFKSMGGSSVNSDIFDSPGSLHDIIVCWIDQHEVCNGEGCKRLQLLIVELIRAGIFLPQAYVRQLIVSGIMDMNGPQVDLDRRKRHYRILKQLPGLFMCDALEETGITEGPHLLDAMHIYSNERRLALRGLFFDQQKNSKTANISAQKLIQGKDGASPALVEQRKAALSSSNVLPAKNIKNEFDIEELKVAISVLLQFPNSSSSSMDTGLDESQESAKRAFGSLGNKMDLMEGTPGCEECQRAKRQKLHEERSSCFQVHSPLPSDDEDTWWARKGPKSLESFKVDAPLKSIKQVPKSRQKTVRKTQSLAQLTVAARIEGGEGASTSHSCDNRVSCPHHKSVMEDETPKSIGGIRTNPCGDIVAIGKTLKKLRFGEKRTIIVWLMTVVRKLVEETENTLVKARQFARPFTPVDDRSSIGWKLGEDELSAILYFMDLTNDLVSAAKFLLWLFPKVLSSPKSTIHSGRNALMPPRNVDNKVCEVEEAFLLSSLRRYENILVATDLIPQTLSATMHSAAAVMASYGRVSGSAALVYAQYLLKKYGNVGSVIEWEKNFKVACDKKLLSELEAGRSADGELGFTLGVPAGVEDLDEFFRQKIGGGGRLSRVSTNMRDIVQRHIEDTFHYFLGKDRKLFTASPPKSPDIDKWDNGYQVAQQIVTGIMDCLRQTGGAAQEGDPSLVSSAVSAIIGNVGPTIAKIPDLSGINNTKSSSATGSLNFARHILRIHITSLCLLKEALGERQSRAFEIALATEASSVLAVVLSPGKASRTQFQLSPEAHDSNTNMSNEFLNSSTKLRGRATKIAAAVSGLVIGLVIHGVTSLERMVTVLRLKEGLDVIQFVRNTRSSANGNARSIGAPKVDNSVEVKVHWFRLLVGNCKTICDGLIVELLGEPCMVALSRMQRMLPLSLVFAPAYSIFAFLMWRPFILNTNLANREDINQLYQSLTVAIVDAIKHLPFRDVCLRDSCGFYDLVAADAIDAEFAAMLDLNGSDIHLKSMAFVPLRARLFLNTIIDCKMPQSLFVPEDGNRSSGHGESEVQYSDKETKLLDKLVHALDTLQPAKLHWQWVELRLLLNEQSLLEKLDSHNMSLVDALRSSSPSGKAAASENENYFITIILTRLLVRPDAASLFSEVVHLFGQSFEDSMLLQAKWFLGGPDVLFGRKTIRQRLISIAENEGFSSKAQFWKPWGWCNSGSDSKRGGKKFEVTSLEEGEVVEEGTDSKKYGSTQTLDMEGSNVHQQQVTEKALIELLIPCIDRSTDESRNTFASDLIKQFNTIDQQINAVIRGASKQAGTIPSGIEGPVNKRNNRKVMRGGSPGLARRPTGTSDSAPPSPAALRASMSLRLQLLLRFLPIICADGEPSGRNMRQILAPIILRLLGNRVVYEDADLSFYQTQSYASKMEVESPAEASSVALAGFSGDSLFDRLLLVLHGLLSSCQPSWLRSKPDSKSSSEFTKESSGFDCEVAEALQNDLYRMQLPDTIRLRIQTAMPILLPSVRCSVSCQPPSVPFAGTALLQSSISLPGAHSCPPQRNMGLLARTATNISGKFKPSLLQLDHDMEIDPWTLLEDGAVCGPSSSNTAVIGSGDHGNLRASSWLKGAVRVRRTDLTYTGAMDDDS
Length2266
PositionKinase
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.224
Instability index48.56
Isoelectric point8.30
Molecular weight250010.44
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17466
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     299.95|     103|     224|     167|     319|       1
---------------------------------------------------------------------------
  167-  291 (152.64/132.91)	EDSRKKW.IEGLSQPhkqLRFLADHVPHGFRRKSLFEI...LIRNNVSllratwfiKVTYLNQVRPGSASISSGAPDKTQLSRTE........LWTKDVIDYMQyllddffsrnNSHSTYSRDQSPQV...PYAGSLQhR
  392-  509 (147.31/82.27)	DNSRKAYtISALVEM...LRYLIEAVPDTFVALDCFPLqpyVVSYAVS........DGNFISKVSGDAEKLKNGCTEVPSMHKSNaidaqyqsLAFNNVVSSIQ..........NCAETLAKASSPGYlghNLAKAVQ.S
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     203.57|      67|     226|     970|    1112|       2
---------------------------------------------------------------------------
 1037- 1112 (99.93/202.39)	VVRKLVEET.ENTLVKARQF...ARPFTPVDDRSSIGWKLGEDELSAIlyfMDLTNDLVSAAKfllwlfPKVLSSPKSTI
 1263- 1336 (103.64/49.41)	IVQRHIEDTfHYFLGKDRKLftaSPPKSPDIDKWDNGYQVAQQIVTGI...MDCLRQTGGAAQ...egdPSLVSSAVSAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.64|      31|     226|    1966|    1997|       3
---------------------------------------------------------------------------
 1967- 1997 (52.50/31.03)	LARRPTGTSDSAPPSPAALRASMSLRLQLLL
 2185- 2215 (55.14/28.21)	LARTATNISGKFKPSLLQLDHDMEIDPWTLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.78|      18|     227|     300|     334|       6
---------------------------------------------------------------------------
  306-  326 (28.25/48.52)	LHFKWWYMtRLLqwHNAEGLL
 1711- 1728 (34.53/ 8.27)	LHWQWVEL.RLL..LNEQSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.31|      26|     228|    1807|    1835|       7
---------------------------------------------------------------------------
  120-  147 (35.05/17.68)	KEAIRKRLRAINESRAQKRKAgQVYDvP
 1810- 1835 (46.27/27.48)	RKTIRQRLISIAENEGFSSKA.QFWK.P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     294.63|      98|     975|     860|     969|       8
---------------------------------------------------------------------------
  860-  969 (139.56/128.85)	GLDESQESAKRAfGSLGNKMDLMEG...TPGCEECQRAKRQKLHEERSScfqVHSP...........LPSDDedtwwaRKGPKSLESFKVDApLKSIKQVPKSRQKTVRKTQSLAQlTVAARIE
 1837- 1948 (155.07/102.08)	GWCNSGSDSKRG.GKKFEVTSLEEGevvEEGTDSKKYGSTQTLDMEGSN...VHQQqvtekaliellIPCID......RSTDESRNTFASDL.IKQFNTIDQQINAVIRGASKQAG.TIPSGIE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17466 with Med12 domain of Kingdom Viridiplantae
Unable to open file!