<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17464

Description pre-mRNA-processing protein 40A-like isoform X1
SequenceMAGNSQSSGSQPLQHPAVGSLGPQSFGSSLSMQFRSVVPTHQGQQFGPSASQQFRPLGQGFPSNPGMPAGQNQPYQFSQPIQQLHSRPNQPGHATPPSQAVQMPYVQTNRPLASVPLQSQQSAPPLTNHMPGLAGSGMPISSSYMFAPSSFGQPQNSINTLPQFQPMSQMHAPAVPVAGQPWMSSVNQSVAPVTAVQQAGQHPSVSSSTDSAVNTPSSSQQLSSDWQEHTSGDGRRYYYNKRTKQSVWEKPAELMTPVEKADASTVWKEYTSPEGRKYYYNKVTKESKWTIPEELKLAREQAEKSASQGSQSETSVSSHAPDAAAVSVETSVATVSVVSSTTLTLAGVALSPVPVTPVVTDSNPSPVAISGPSVVSGAQPVLSTSAAGFQHQALAPPPPSAVSASTGVPAASTNANSSSMSHFETTASQEFPGSIDGASAQDIEEAKKGMTVAGKVNVTALEEKTLDDEPLLYASKLEAKNAFKALLESVNVQSDWTWEQAMKEIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQIKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERTRDREDLFESYMVELERKEKEKAAEEHRWNVAEYRKFLESCNLIKAHTQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRTERKNRDELRKLMEGHAAAGILTAKTHWRDYCLKIKDLPQYQAVASNVSGSTPKDLFEDIAEELEKQYHDDKTRIKDAMKLGKFTLLSTWTFDDFKAAILEDVGSPLISDINLKFVFEELLERAKEKVEKEARKRQRLADDFTKLLYTFKEITASCNWEDCKPLFEESEEYRSIGEESLRREIFEEYIGQLQEKVKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREREKGKERSKKDETDGENADVIDSHSYKEDKKREKDRDRKHRKRHQTATDDVSSDKDEKEESKKSRRHGSDRKKSRKHAYSPESDSENRHKRHKREHRDGSRRNSGYEELEDGELGEDGEIQ
Length1036
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-1.030
Instability index58.72
Isoelectric point6.46
Molecular weight117324.05
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17464
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.58|      16|      17|     893|     909|       1
---------------------------------------------------------------------------
  909-  925 (20.13/ 6.09)	EkDRER.EREKGKERSKK
  993- 1009 (17.45/ 7.71)	A.YSPEsDSENRHKRHKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     508.47|      64|      65|     549|     612|       2
---------------------------------------------------------------------------
  483-  540 (77.85/51.71)	.F.KALLESVN...VQSDWTWEQAMKEIINDKRYGA..LK...TLG.....................ER..K..QA.....FNEYLG...QR..K.KL.E..AEERR
  549-  612 (107.48/74.79)	EFTKMLEESKE...LTSSTRWSKAVSMFENDERFKA..VE...RTR.....................DR..E..DL.....FESYMVEL.ER..K.EK.EKAAEEHR
  617-  674 (86.36/58.34)	EYRKFLESCNL...IKAHTQWRKVQDRLEDDERCSR..LE...KL......................DR..L..LI.....FQDYIRDL.EK..E.E......EEQK
  691-  757 (74.76/49.30)	ELRKLMEGHAAagiLTAKTHWRDYCLKIKDLPQYQA..VAsnvSGS.....................TP..K..DL.....FEDIAEEL.EK..Q.YH.D...DKTR
  766-  819 (38.36/20.96)	KFTL..........L.ST..WT.....F..DD.FKAaiLE...DVG.....................SPliS..DInlkfvFE....ELlER.aK.EKvEKEARKRQ
  824-  889 (90.69/61.71)	DFTKLLYTFKE...ITASCNWEDCKPLFEESEEYRS..IG...EES.....................LR..R..EI.....FEEYIGQL.QEkvK.EK.ERKREEEK
  893-  956 (32.97/16.76)	E..K........................EREEKEKR..KE...KERkekdrererekgkerskkdetDG..EnaDV.....IDSHSYKE.DK..KrEK.DRD.RKHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.77|      39|      40|     226|     264|       3
---------------------------------------------------------------------------
  226-  264 (77.41/45.43)	WQEHTSGDGRRYYYNKRTKQSVWEKPAELMTPVEKADAS
  267-  305 (75.37/44.04)	WKEYTSPEGRKYYYNKVTKESKWTIPEELKLAREQAEKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     182.14|      25|      25|      47|      71|       4
---------------------------------------------------------------------------
   22-   44 (24.41/10.28)	GPqsfgsSLSMQFRS.V...VP..THQ.....G....Q
   47-   71 (51.17/30.32)	GP.....SASQQFRP.LGQGFP..SNP.....GMPAGQ
   74-   93 (36.03/18.99)	PY.....QFSQ...P.I.QQLH..SRP.....NQP.GH
   96-  107 (22.16/ 8.59)	PP.....SQAVQ.....................MPYVQ
  115-  139 (23.85/ 9.86)	VP.....LQSQQSAPpLTNHMPglAGS.....GMP...
  158-  181 (24.52/10.36)	IN.....TLP.QFQP.MSQ.MH..A.PavpvaGQP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.19|      11|      18|     348|     364|       5
---------------------------------------------------------------------------
  348-  358 (20.85/11.37)	VALSPVPVTPV
  392-  402 (20.34/ 8.26)	QALAPPPPSAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.69|       9|      31|     980|     989|       8
---------------------------------------------------------------------------
  980-  989 (12.85/ 9.36)	RRHGSdRKKS
 1011- 1019 (17.84/ 8.17)	HRDGS.RRNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17464 with Med35 domain of Kingdom Viridiplantae
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