<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17463

Description pre-mRNA-processing protein 40A-like isoform X2
SequenceMAGNSQSSGSQPLQHPAVGSLGPQSFGSSLSMQFRSVVPTHQGQQFGPSASQQFRPLGQGFPSNPGMPAGQNQPYQFSQPIQQLHSRPNQPGHATPPSQAVQMPYVQTNRPLASVPLQSQQSAPPLTNHMPGLAGSGMPISSSYMFAPSSFGQPQNSINTLPQFQPMSQMHAPAVPVAGQPWMSSVNQSVAPVTAVQQAGQHPSVSSSTDSAVNTPSSSQQLSSDWQEHTSGDGRRYYYNKRTKQSVWEKPAELMTPVEADASTVWKEYTSPEGRKYYYNKVTKESKWTIPEELKLAREQAEKSASQGSQSETSVSSHAPDAAAVSVETSVATVSVVSSTTLTLAGVALSPVPVTPVVTDSNPSPVAISGPSVVSGAQPVLSTSAAGFQHQALAPPPPSAVSASTGVPAASTNANSSSMSHFETTASQEFPGSIDGASAQDIEEAKKGMTVAGKVNVTALEEKTLDDEPLLYASKLEAKNAFKALLESVNVQSDWTWEQAMKEIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQIKAREEFTKMLEESKELTSSTRWSKAVSMFENDERFKAVERTRDREDLFESYMVELERKEKEKAAEEHRWNVAEYRKFLESCNLIKAHTQWRKVQDRLEDDERCSRLEKLDRLLIFQDYIRDLEKEEEEQKKIQKEQLRRTERKNRDELRKLMEGHAAAGILTAKTHWRDYCLKIKDLPQYQAVASNVSGSTPKDLFEDIAEELEKQYHDDKTRIKDAMKLGKFTLLSTWTFDDFKAAILEDVGSPLISDINLKFVFEELLERAKEKVEKEARKRQRLADDFTKLLYTFKEITASCNWEDCKPLFEESEEYRSIGEESLRREIFEEYIGQLQEKVKEKERKREEEKAKKEKEREEKEKRKEKERKEKDREREREKGKERSKKDETDGENADVIDSHSYKEDKKREKDRDRKHRKRHQTATDDVSSDKDEKEESKKSRRHGSDRKKSRKHAYSPESDSENRHKRHKREHRDGSRRNSGYEELEDGELGEDGEIQ
Length1035
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-1.027
Instability index58.77
Isoelectric point6.39
Molecular weight117195.87
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17463
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     187.27|      37|      38|     215|     251|       1
---------------------------------------------------------------------------
   48-   91 (48.81/23.50)	.PSASQQFRPLGQGFPSnpgmpaGQNQPYQFSQPIQQlhSRPNQP
  215-  251 (72.84/38.49)	TPSSSQQLSSDWQEHTS......GDGRRYYYNKRTKQ..SVWEKP
  256-  291 (65.62/33.99)	TPVEADA.STVWKEYTS......PEGRKYYYNKVTKE..SKWTIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     132.44|      26|      26|     875|     900|       2
---------------------------------------------------------------------------
  875-  900 (39.64/19.02)	EK.VKEKERKREEE.KAKK......EKEREEKEK
  903-  929 (35.86/16.48)	EKeRKEKDRERERE.KGKE......RSKKDETDG
  943-  974 (35.00/15.91)	DK.KREKDRDRKHR.KRHQtatddvSSDKDEKEE
 1002- 1024 (21.94/ 7.14)	....RHKRHKREHRdGSRR......NSGYEELE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.60|      25|      25|     499|     523|       3
---------------------------------------------------------------------------
  499-  523 (43.13/27.80)	QAMKEIINDKRYGALKTLGERKQAF
  538-  558 (26.42/14.17)	RRMRQIKAREEFT..KMLEESKE..
  574-  591 (21.05/ 9.79)	.......NDERFKAVERTRDREDLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.68|      17|      26|     138|     159|       4
---------------------------------------------------------------------------
   97-  114 (24.76/ 6.77)	PSQAVQmPYVQTN.....RPLAS
  148-  169 (26.92/20.63)	PSSFGQ.PQNSINtlpqfQPMSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     214.75|      58|      65|     737|     801|       5
---------------------------------------------------------------------------
  642-  681 (52.79/34.83)	............DDERCSR.LEK......LDRLLI...........................FQDYIR.......DLEKEEEEQKKIQKEQLR
  701-  762 (67.97/47.23)	AGILTAKTHWR..DYCLKI..KDlpqyqaVASN.VS...................gstpkDLFEDIAE.......ELEKQYHDDKTRIKDAMK
  763-  823 (59.19/55.88)	LGKFTLLSTWTFDDFKAAI.LED......VGSPLISdinlkfvFEE......................llerakeKVEKEARKRQRLADD...
  824-  874 (34.80/20.12)	...FTKL.LYTFKEITASCnWED......C.KPL.........FEEseeyrsigeeslrrEIFEEYIG.......QLQ...............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.06|      18|      20|     172|     189|       6
---------------------------------------------------------------------------
  172-  189 (37.38/19.34)	AP..AVPVAGQ.PWMSSVNQS
  191-  211 (23.69/ 9.90)	APvtAVQQAGQhPSVSSSTDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.19|      14|      19|     312|     325|       7
---------------------------------------------------------------------------
  312-  325 (23.98/12.91)	ETSVSSHAPDAAAV
  355-  368 (22.21/11.41)	TPVVTDSNPSPVAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.84|      32|      36|     370|     404|       8
---------------------------------------------------------------------------
  370-  404 (51.49/36.95)	G.PSVVSGAQpvlSTSAAGFQHQALAPPPPSAVSAS
  406-  438 (52.36/29.88)	GvPAASTNAN...SSSMSHFETTASQEFPGSIDGAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.81|      16|      20|       9|      27|       9
---------------------------------------------------------------------------
   12-   27 (30.23/23.48)	PLQ.HPAVGSLGPQSFG
   31-   47 (25.58/ 9.97)	SMQfRSVVPTHQGQQFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17463 with Med35 domain of Kingdom Viridiplantae
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