<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17462

Description U-box domain-containing protein 33-like
SequenceMADHQDMITYVAVGKYVKDCKSILSWAIENNVGGSRICIIHVHKPAKLFPLVRSLMTERKVRERLETGTQSMHAIMTEYFLFCQQKGVQAQTQTIEMGSIREGILKLISKYGIRKLVIGSTSANHYKKKVELGSKKAKFVCKTAPVSCQVQVICKGHLIFTREASAADTETGQSNLNRSRSGPSGYNNRVGSPVIECSEFSKLRSVTAGRSRSTTALAALIAPFPELSKEFSSPTSPGDSSYSASSPTRPVEITLNGWNDRNGKALQYSSSISPPAALDYSSRSSSTLELAPSLVQQSPRLIPSSSNISPSSNGAHNVVEQSLEEQLQQAMAALKKEALVRQRAEGYMIDAIRRAQDAENQRDKYIEELWISKEQETSLKSQLAELQKERDELQMERDHALKEAEGLRRKEEDLNGNMLELPEFSLSKIAEVTQGFHESQKIGQGGYGNIYIGRLQTEVAIKMLHSHGSQGSQEFQMEVNVLGQLRHPNLVKLIGSCPEAFALIYEYLPNGSLEDRLNCKDNSPPLSWQTRLRISIELCSVLVYLHSSTRPRTIVHGDLKPANILLDSNYVCKLSDFGICRVLSRDQSSSDSVTLSHNTVPKGTLPYLDPEFLQRGVLTVKSDVYSFGIILLQLLTGKSPPYSIVDDVNSALRAGTFESLLDPSAGSWPFEVALCLAELALMCSDNNRKRRPDLGTGVLELLESLRDPAGGT
Length712
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.344
Instability index56.53
Isoelectric point8.08
Molecular weight78599.51
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17462
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.19|      10|      44|     657|     666|       1
---------------------------------------------------------------------------
  657-  666 (19.04/13.15)	FESLLDPSAG
  702-  711 (19.15/13.29)	LESLRDPAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      49.13|      11|      23|     358|     369|       2
---------------------------------------------------------------------------
  358-  369 (15.55/13.54)	AENQRDKYiEEL
  384-  393 (15.77/ 8.14)	AELQKER..DEL
  404-  414 (17.81/10.04)	AEGLRRKE.EDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.92|      12|      22|     174|     185|       3
---------------------------------------------------------------------------
  174-  185 (21.36/13.75)	SNLNRSRSGPSG
  198-  209 (19.56/11.95)	SEFSKLRSVTAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.66|      36|      70|     232|     267|       4
---------------------------------------------------------------------------
  232-  267 (64.86/37.88)	SSPTSPGDS.SYSA.SSPTRPVEITLNGWNDRNGKALQ
  269-  300 (34.25/16.58)	SSSISPPAAlDYSSrSSSTLELAPSLVQQSPR......
  305-  335 (50.55/27.93)	SSNISP..S.SNGA.HN...VVEQSLEEQLQQAMAALK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.98|      37|      39|     533|     570|       5
---------------------------------------------------------------------------
  533-  570 (60.04/41.80)	RIS.IELCSVLVYLHSSTRPRTIVHGDLkPANIL..LDSNY
  573-  612 (54.94/33.58)	KLSdFGICRVLSRDQSSSDSVTLSHNTV.PKGTLpyLDPEF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17462 with Med32 domain of Kingdom Viridiplantae
Unable to open file!