<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17458

Description U-box domain-containing protein 35-like isoform X2
SequenceMDKSEIEADDNLAPLPSSSLVVAVAINGKRKSKYAVKWALEKFVPEGKATFKLMHVRARINSVPTPMGTIPVSQVRDEVAAAYMKDVEWQTSEMLLPCKKLCAQKKVEVDVLVIESDNVANALAEEIAKLGINKLVIGASYRGLFTRKLKGLASKISVRTPRFCTVYAISKGKLSSIRPSNIEMTRSLKDDSSEASYSTRSSSCYTSSSLTGKSSFETSQSLDVEEGKDDMSSCPTNEDSEHAMRQVSIFKSMPTDNQSCISDQVSASEMLTEYPSSETQENISFELEKLRTELRHARGMYAMAQSETIDASLKLINLNKHRLEEAMKLKEINLNEEMAKELARQEKKRYEAAVTEATYVRQCAEREASQRKEAEMKAIHDAKEKEKLENALVGPVQPYKKITWEEIVSASSSFSEELKIGMGAYGAVYKCSLHHTTAAVKVLHSKGSHMTKQFQQELKILSEIHHPHLLLLLGACVDHGCLVYEYMENGSLEDRLLRKNGTTPIPWFERYRIAWEVASVLAFLHNSKPKPIIHRDLKPANILLDYNLVSKIGDVGLSTMLRSDSTSMSTSCKDTGPVGTLCYIDPEYQRTGSISPESDVYAFGMVILQLLTAKPAMALAHVVETALSDGHLLEILDQEAGNWPIEETKALAELGLSCAEIRRRDRPDLKDKVLPALERLKEVGERARDSIPIVLSPPNHFICPILKEVMNDPCVAADGYTYDRGAIDQWLEVNNKSPMTNMPLPNKNLIPNFTLLSAIMEWKSRDQ
Length767
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.350
Instability index44.31
Isoelectric point6.20
Molecular weight85573.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17458
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.80|      34|      37|     146|     181|       1
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  146-  181 (50.80/44.11)	TRKLKGLASKISVRTpRFCTVYAISK..GKlSSIRPSN
  185-  220 (55.00/37.03)	TRSLKDDSSEASYST.RSSSCYTSSSltGK.SSFETSQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.46|      16|      16|     225|     240|       2
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  223-  238 (27.99/17.07)	DV........EEGKDDMS...SCPTNE
  239-  257 (22.05/11.87)	DS........EHAMRQVSifkSMPTDN
  258-  281 (17.42/ 7.82)	QScisdqvsaSEMLTEYP...SSETQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.73|      14|      17|      44|      57|       3
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   44-   57 (24.97/16.05)	VPEGKATFKLMHVR
   63-   76 (25.77/16.79)	VPTPMGTIPVSQVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.28|      27|      42|     325|     354|       6
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  325-  354 (38.92/33.97)	EAMKLKEINLNeemAKELARQEKKRYEAAV
  367-  393 (41.36/27.48)	EASQRKEAEMK...AIHDAKEKEKLENALV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17458 with Med32 domain of Kingdom Viridiplantae
Unable to open file!