<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17445

Description mediator of RNA polymerase II transcription subunit 30-like
SequenceMEQKTSSPLTSAKTTQELAIEGQKHLEETIESAFQILSSMNDELCNPALWSTTTSTSLSSATAITTNTAPTAKGPSSVSSNGVANGDAASSDTHPAESVGGTGGALEEARFRYKNSVNSLRAVIAAIPSSRKAKAFEMGSPPSGPESPEDQTEIQKLEERASSLRKELANKNMYLKLLIDQLRDLITDISTWQSPCSV
Length198
PositionHead
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.04
Grand average of hydropathy-0.475
Instability index55.02
Isoelectric point5.03
Molecular weight21034.10
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17445
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.70|      44|      50|      47|      95|       2
---------------------------------------------------------------------------
   52-   95 (71.75/41.44)	TTTSTSLSSA.....TAITTNTAPTAKGPSSVSSNGVANGDAASSDTHP
  100-  148 (67.95/29.51)	GGTGGALEEArfrykNSVNSLRAVIAAIPSSRKAKAFEMGSPPSGPESP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17445 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKAFEMGSPPSGPESPEDQTEIQKLEERASS
2) TSLSSATAITTNTAPTAKGPSSVSSNGVANGDAASSDTHPAESVGGTGGA
133
56
163
105










Molecular Recognition Features






MoRF SequenceStartStop




1) EARFRYK
2) RKAKAF
108
131
114
136