<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17444

Description probable mediator of RNA polymerase II transcription subunit 26c
SequenceMMDLDDFRAVLDSCGVDVWTFIDTAIAVASLDYGGELKHRRDGIVERLYAATSPAQPRCRNCDDLDNRRPNNRYEVKVPAGKNSSGQEGKEGSPVTPESVERDDDEDLDPYAGLFDDEQKKILEIKEHLEDPDQSEDSLVELLQTLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKDIVDEWVKLNQPGEQTSAALMAYGDSPQQKIPQNGHHQVPDFGYSPNPHNGSSGSDKNNSESEPKPKAIPRKEAPPRPAQLAPVSASAHQNRQKEQKDFDSDKLASARKRLHENYKEAENAKKQRTIQVMDIHDIPKPKNAFFTKNKGGGGGGGGGSHGRHW
Length350
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.05
Grand average of hydropathy-1.028
Instability index43.86
Isoelectric point5.98
Molecular weight39154.92
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17444
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.93|      45|      59|     221|     266|       1
---------------------------------------------------------------------------
  221-  266 (78.85/47.10)	QNGHHQVPDFGySPNPHNGSSGSDKNNSESE..PKPKAIPRKEAP..PRP
  278-  326 (67.08/35.41)	QNRQKEQKDFD.SDKLASARKRLHENYKEAEnaKKQRTIQVMDIHdiPKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.28|      18|      38|      53|      70|       3
---------------------------------------------------------------------------
   53-   70 (36.02/16.73)	SPAQPRCRNCDDLDNRRP
   93-  110 (32.27/14.40)	SPVTPESVERDDDEDLDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17444 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GEQTSAALMAYGDSPQQKIPQNGHHQVPDFGYSPNPHNGSSGSDKNNSESEPKPKAIPRKEAPPRPAQLAPVSASAHQNRQKEQKDFDSDKLASARKRLHENYKEAENAKKQRTIQVMDIHDIPKPKNAFFTKNKGGGGGGGGGSHGRHW
2) QPRCRNCDDLDNRRPNNRYEVKVPAGKNSSGQEGKEGSPVTPESVERDDDEDLDPY
201
56
350
111










Molecular Recognition Features






MoRF SequenceStartStop




1) AIPRK
2) GGGGSHGRHW
3) MDIHDIPKPKNAFFTKNKG
256
341
318
260
350
336