<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17443

Description U-box domain-containing protein 33-like isoform X1
SequenceMKLLQPSHPPHHSLPGDQFHGLSSPPSYRFGFHPEVSSRSRLPEIVEEAGDEKVHLAVGKSVDRAVALLQWSFKRFRNREICILHVHQPSHAIPTLLGKLPASRANAEVVAAHRRNEWAQTMKLVEYYVSICSIEKVKASIVTIEADQVQKGIVDLVNRHGIRKLVMGAAPENCMKVKKSSSKANYTAKNAPLFCEIYFIYKGKHVWTREASENPNPLPPCSKPEITTEETLRSKSFHCSRNNAIHPESLRSVSARSTLFTESSNWVQGETKHVKVDSLAALSHSSHNLQNSFCPTTISTGLENNSAERMVSSTSEPKVEEEGLYSQLTEARIQAEASRNEVLVEIINCKKLELEAVEAISKVNVYESAHAREVKLRKEAEDALITTLQDQEKLLEEREEVTIEIQKTMRNVALLDSRAQEANRRCDEAAGELNLIQASIATLRQEKQRIRRQKLEALRWLERWRRGQAGAANCDGFIGFVEGLPELAEVSLSDLQTATCNFSESFKIGQGGYGCVYKGEMLGRTVSIRKFYPHNMQGPSEFQQEVQVLGKLQHPHLVTLLGVCPEAWSLVYEYLPNGSLQDHLYRKSNISPLMWKSRIRIIAEICSALCFLHSSKPEMIVHGDLKPGNILLGTDLSCKISEFGICRLVTEENLYCPSFRRSTEPKGAFTYTDPEFQRIGVLTPKSDTYSFGLIILQLLTGRPPVGLAAELRKAVSCGKLTSILDSSAGEWPAFVARRLADLGLQCCQLSSRERPDLTPSLVRELEQLHISEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLENGRETSPMTNLKLSHLHLTPNNALRLAIQDWLCKS
Length846
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.341
Instability index49.33
Isoelectric point7.33
Molecular weight94862.33
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17443
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.96|      50|     217|      19|      73|       7
---------------------------------------------------------------------------
   19-   73 (83.36/56.32)	FHGlssppSYRFGFHPE....VSSRSRL.PEIVEEAGDEKVHLAVGK..SVDRAVALLQWSF
  237-  293 (75.60/41.26)	FHC.....SRNNAIHPEslrsVSARSTLfTESSNWVQGETKHVKVDSlaALSHSSHNLQNSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.93|      17|      17|     379|     395|       8
---------------------------------------------------------------------------
  366-  384 (17.87/11.49)	YESAHAREvKLRkEAEDAL
  385-  402 (22.06/16.25)	ITTLQDQE.KLLeEREEVT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17443 with Med32 domain of Kingdom Viridiplantae
Unable to open file!