<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17437

Description U-box domain-containing protein 52-like
SequenceMLPTGRAQNIMILSRTSSLVDDDDDNVNSTVIAIDKDKNSHYAVKWAVDNLLGRSTDHCIQLVHVRNQCLHPHDFDQAVSREGRPPNEPELQQLFLPYRGFCARKGIQAKEVILHDIDIPSALIDYIAHHSISNIVVGASHRNAITRKFRDADVPSSLFKSAPASCAIYVISKGKVQSTRPAGRSETSRQRSQKVVRHTAHPDTHDSDDTNRNSVVVGRWRSTGSDIFSLDRSSDSLHTPQSNFGSSSRTSSPTLSIDSYASASSSQRNSDSSEPFGFRPYDMYLDNLESSVALESSNSPGSSQTIKGIEAEKMRLRIELKHTMDTYNSVCKEAVVARQKAGELQQWKKFEEQHKLEEAKLAEEAALVLAEVERHKTKAALEAAKMQQRLVEMETQRRKNTEMQAKQEAEEKKRAMDTLANNNVVYRRYSMTEIEVATDHFNSALKIGEGGYGPVYKGVLDHTIVAIKILRPDLSQGQQQFQREIEVLSCIRHPNMVLLLGACPEYGCLVYEYMDNGSLEDRLFRKDDTPPIPWPTRFKIAAEIATGLRFLQTDPEPIVHRDLKPGNILLDKNYQSKISDVGLARLVPPSAADSVTQYHMTAAAGTFCYIDPEYQQTGELSVKSDIYSLGVVLLQIITARPPIGLAHQVGEAIEQETFSEMLDPTVTDWPIEEALSLANLALKCCEMRKRDRPDLGSVLLPELDRLRDLGSVYLSINNQMIANETRFPNSDPVIGSTVNEEEEEHDILELDIQRRSV
Length757
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.496
Instability index49.91
Isoelectric point5.70
Molecular weight84778.48
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17437
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.69|      51|      56|     199|     250|       1
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  199-  250 (86.41/60.67)	TAHPDTHDS.DDTNRNSVVVGRWRSTGSDIFsLDRSSDSLHTPQSNFGSSSRT
  254-  305 (83.28/53.90)	TLSIDSYASaSSSQRNSDSSEPFGFRPYDMY.LDNLESSVALESSNSPGSSQT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     108.66|      27|      56|     338|     364|       2
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  338-  364 (43.72/31.39)	RQKAGELQQWKKFEEQHKLEEAKLAEE
  366-  389 (26.63/16.34)	...ALVLAEVERHKTKAALEAAKMQQR
  397-  422 (38.31/26.62)	RRKNTEMQAKQEAEEKKRAMDT.LANN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.57|      16|      50|     433|     448|       3
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  433-  448 (27.66/17.78)	EIEVAT..DHFNSALKIG
  484-  501 (20.91/11.78)	EIEVLSciRHPNMVLLLG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.86|      38|      51|     575|     612|       7
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  575-  612 (66.77/44.70)	QSKISDVGLARLVPPSAADSVTQYHMTAAA...GTFC.YIDP
  623-  664 (55.10/35.63)	KSDIYSLGVVLLQIITARPPIGLAHQVGEAieqETFSeMLDP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17437 with Med32 domain of Kingdom Viridiplantae
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