<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17436

Description probable mediator of RNA polymerase II transcription subunit 26b isoform X2
SequenceMAKKPGSLEYWRNYFRTANSDIFDIIDHAIMVASSDCPKEFRLRRDRIAERLFSCRLTRCSGCDRVELAVPGSEEEKEDDDDDGNCKNSGFGRDGCAFEAGASKESKVNSSRDDQGEMNMNQVSTYSYGEAEALTDEIEEESRIVGEVLRIKEILYSSEEESDSILFESLRRLQLMALTMDTLKATEIGKAVNRLRKHASKQIRHLARTLIDGWKDMVDEWVSATAPAVEGIGAVSGSGGTPDSVNPSVVDEYEGLPSPPLDGLFFATQPTSIELSQFFDGMDDDGNPRNSGEFSKNRDYGRKPMQECQNNTKRKQQTPNVANVLAKDNKSHQVKKQEVVLKPNKPSNTDYGPGRPPKISTEQMVSDETKSKLKSDKVTIQKRPVTGQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTIQVMELHDLPKQGLGHRNPHVKPGNQNRHWSHGRR
Length461
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.06
Grand average of hydropathy-0.919
Instability index41.80
Isoelectric point6.37
Molecular weight51900.38
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17436
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.38|      12|      18|     370|     381|       1
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  370-  381 (19.89/13.08)	KSKLK.SDKVTIQ
  389-  401 (16.49/ 9.68)	QDKFKcSDEVAVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.78|      11|      16|      84|      94|       4
---------------------------------------------------------------------------
   84-   94 (22.44/13.19)	GNCKNS..GFGRD
  101-  113 (14.34/ 6.11)	GASKESkvNSSRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.77|      18|      26|     408|     425|       6
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  408-  425 (29.09/15.81)	KRKLQERYQQAENAKRQR
  437-  454 (32.69/18.54)	KQGLGHRNPHVKPGNQNR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17436 with Med26 domain of Kingdom Viridiplantae
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