<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17431

Description mediator of RNA polymerase II transcription subunit 16 isoform X2
SequenceMRAAGSLSMNGDRILQLLQSGYQGCLRWLSSKAGTAVNSKSAFEEKFLSQQSQTSARWPNFLCVCSVFSSGSIQLHWSQWPPSQNGVALKWFSTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNAFQATPKTSSSNGVPPSLNPPSWAGFAPLAAYLFSWQEYLISEAKQGKRTDQDLNDTVPLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLKPVVLHQIFGNPTSSYGGQAPMQTVWVSKVDTSIPPTNDFKSHEAAATGPTSDVRKTSDLTVDKGQKVIFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTMLKIIRVLPPAVPSSQAKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDSIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALLNPSALVPEPWHESGETLSGIDPEAMAVEPALVLSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPATSQGGQSGTASSTGSTQMQAWVQGAIAKISSTNDGVSNSTPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFLLGAQRNAETNMQKPQPSAPSKLEEINSISAKPASAVARSEDGQISRVNQLLPGAKGVEEGPAGRSRLGSGNAGQGYTFEEVRVLFLILMDLCRRTVGLAHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDPDDMGHVDDSPKLRNSGDPIDFNSLENSDVYYGPHSLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGASHPPNQNDRETWWISRWAYGCPMCGGTWVQVV
Length1057
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.08
Grand average of hydropathy-0.178
Instability index40.31
Isoelectric point6.65
Molecular weight113883.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17431
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.62|      24|     245|     229|     268|       1
---------------------------------------------------------------------------
  232-  261 (35.24/32.90)	GVTAVAFdpTRGGsviaVVIVEGQYMSPYD
  372-  395 (45.38/18.76)	GEIAIAF..LRGG....VHIFSGPNFAPVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.78|      17|      17|     592|     608|       4
---------------------------------------------------------------------------
  592-  608 (28.66/19.19)	IQAYVDAVLDLASHFIT
  610-  626 (30.12/20.54)	LRRYASFCRTLASHAVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.30|      26|     340|     526|     568|       6
---------------------------------------------------------------------------
  111-  141 (42.17/13.40)	AIITDSGA.....MHVAGV..PIVNPSTVVvwevtPGP
  534-  566 (36.13/26.99)	AMVLDMQArllldMLGKGIesALLNPSALV.....PEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     658.31|     165|     573|     283|     477|       7
---------------------------------------------------------------------------
  283-  477 (268.86/137.78)	VVLHQIFGNpTSSYGGQAPMQTVWVSKVDTSI..........................PPTNDFKSHEAAATGPTSDVRKTSDL.TVDKGQKV..IFDPFDLPSDVRTLARIVysahggeiaiaflrggvhifsgpnfapvdNYQIN..VGSAIAA.PAFSSTSCCSASVWHDTSKDRTMLKIIRVLPPAV.....PSSQAKANSSTWERAIA.ERFWWSLLVGVDW.WDAVGC
  656-  842 (199.04/92.77)	..........TASSTGSTQMQA.WVQGAIAKI..........................SSTNDGVSN..STPNPISGPSSFMPI.SINTGTFP..GTPAVRLIGDCHFLHRLC..qlllfcfffrrtqlprfllgaqrnaetNMQKP..QPSAPSKlEEINSISAKPASAV.ARSEDGQISRVNQLLPGAKgveegPAGRSRLGSGNAGQGYTfEEVRVLFLILMDLcRRTVGL
  858- 1046 (190.42/88.64)	VRLHYIDGN...........YTVLPEVVEASLgphmqnmprprgadaaglllrelelhPPAEEWHRRNMYG.GPWSD...PDDMgHVDDSPKLrnSGDPIDFNS.............lensdvyygphslwprkrrmserdaAFGLNtsVGLGAYL.GIMGSRRDVVTAVWK.TGLEGVWYKCIRCLRQT.......SAFASPGASHPPNQND.RETWW.....ISR.W.AYGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17431 with Med16 domain of Kingdom Viridiplantae
Unable to open file!