<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17430

Description mediator of RNA polymerase II transcription subunit 36a-like isoform X2
SequenceMRPPRGRGGGFRGRGDGGRGRGRGGGGRGGDRGGAMRGRGGRGAGGRGRGGGRGGMKGGSKVVVEPHRHGGVFIAKGKEDAIVTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAIIGGVDEIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHPSKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTQPAEAVFQSEVNKLKQDQFKPFEQVTLEPYERDHACVVGGYRVPKKSKIAA
Length300
PositionUnknown
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy-0.408
Instability index25.86
Isoelectric point10.23
Molecular weight32044.22
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17430
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.12|      17|      18|      19|      36|       1
---------------------------------------------------------------------------
   14-   30 (38.72/10.41)	RGDGGRGR.GRGGG..GRGG
   32-   51 (29.40/ 8.73)	RGGAMRGRgGRGAGgrGRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.44|      14|      17|     190|     203|       2
---------------------------------------------------------------------------
  190-  203 (25.44/19.88)	IIEDARHPSKYRML
  210-  223 (24.00/18.36)	IFSDVAQPDQARIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17430 with Med36 domain of Kingdom Viridiplantae
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