<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17428

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X5
SequenceMPAIACVVSFNLFLRLQFLEASELVSPHLNSANQLLAKLSANIQRVMGFEYQLNRSQLSGSLLDIASCKPVSCFHSQFGQSACWAPFDIYMENAMDGKQLPIKSAVDVLTEAIKTLQAFNQASWQETFLALWLSALRLVQRERDPPEGPIPRLEARLCVLLSIVPLAITNVLEDEAKLCHSSTAGATFTGSVESGYGHKMNGKGCASRKDGLISSLQILGHFSGLLCPPLSVTDAANTAARKAASFITNAKNQRDIIRGGSLVDASIKAGGNMRHLIVEACIARNLIDTSAYIWPGYVSAPIISLSDSSSHDKSPWLMFMEGAPLNGSLIDYLIMNPASSLAEIEKLFSIALNGSEEEKSAAAKILCGASLSRGWNIQEHVVRFVVKLLSPPIPPSHTGPGSHLVDDMSMLCALLFGASSIDTVHILSLHGAVPEVAASLMPLCEVFGSLKPASRNKSSKDDEPSIYMVFSFAFLYLLRLWKFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIYIDSYPKLRAWYCQNKSCIASTLAGLSSGNPVHQVANKILSMIYWKMTKSAASSGNSSTPTSGSACESPRSTGEDAYQRPVLPAWEVLEAIPFVLEAILTACANGRLSSRDLTTGLRDLVDFLPASLAAIVSYFSAEVTRGIWKPVAMNGKDWPSPAAILPSMESEIKAVLAAVGVDAPSCSTGNSPIMLPLPMAALVSLTITFKLDKSLEYIHSVAGLALEHCASGCPWPSMHIIGSLWAQKIRRWHNFIVVSSSRSIFRQNKEAIAQLLRSCFTSFLGSLNISTSSLSNQSSVNGLLGSTISVGGGGSSVAPGFLFLRSCRTIHNVHYVSDIIVGLVAEYARNLASRWASTDSPRLKSSQASLSIASVRAREVATLGASLLCVTGGVQLVQELFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAYLLILSGAIVWGVEAKLTTCAFSRRARAVGVHMDFLAGVLEGNISLGCDPATWKAYLSCLVGLMVRFAPAWIQEVKLETLRKLACGLRGWHECELAISLLERGGTAAIGSVAELLNVIS
Length1085
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy0.211
Instability index48.66
Isoelectric point8.56
Molecular weight116991.03
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17428
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.38|      28|      29|     633|     660|       1
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  633-  658 (37.39/22.27)	...............LEAILTA.......CANGRLSSRDLTTGLRDLV
  659-  684 (28.60/15.08)	DF.........lpasLAAIVS.............YFSAEVTRGIWKPV
  690-  736 (28.39/14.91)	DWpspaailpsmeseIKAVLAAvgvdapsCSTGN.SPIMLPLPMAALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.33|      47|     255|     547|     598|       2
---------------------------------------------------------------------------
  547-  598 (76.48/60.85)	RAWYCQNK........SCIASTLAGL..SSGNPVHQVA.NKILSmiyWkmTKSAASSGNSSTP
  795-  852 (65.84/38.85)	RSIFRQNKeaiaqllrSCFTSFLGSLniSTSSLSNQSSvNGLLG...S..TISVGGGGSSVAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.19|      25|     250|     137|     161|       3
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  137-  161 (46.48/26.39)	RLVQRERDPP.....EGPIPRL...EARLCVLL
  383-  415 (35.71/18.63)	RFVVKLLSPPippshTGPGSHLvddMSMLCALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     279.02|      91|     680|     277|     375|       4
---------------------------------------------------------------------------
  277-  375 (136.37/107.63)	IVEA.CIARNLIDTSAYIWpGyVSAPIISLSDSSSHDKSPWLM.FMEGApLNGSLidYLIMNPASSLAEIEKLFSIALNGS....EEEK.SAAAKILCGAslsRGW
  959- 1056 (142.65/85.88)	IVEGyAMAYLLILSGAIVW.G.VEAKLTTCAFSRRARAVGVHMdFLAGV.LEGNI..SLGCDPATWKAYLSCLVGLMVRFApawiQEVKlETLRKLACGL...RGW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.58|      18|      75|     775|     792|       7
---------------------------------------------------------------------------
  775-  792 (35.55/22.82)	GSLWAQKIRRWHNFIVVS
  853-  870 (33.03/20.68)	GFLFLRSCRTIHNVHYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     215.44|      67|     448|      13|      92|       8
---------------------------------------------------------------------------
   13-   92 (99.69/89.68)	FLRLQFLEASELVSPHLnsaNQLLAKLSANIQRVMGFEYQL...NRSqlsgslldIASCKpVSCFhSQFGQSACWAPFDIYME
  472-  541 (115.76/70.11)	FAFLYLLRLWKFYRPPL...EQCISERGVAVRGELTLEYLLllrNRS........IASCQ.VETY.SNPNQSEPASGKPIYID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17428 with Med33 domain of Kingdom Viridiplantae
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