<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17427

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X4
SequenceMLSYSQVVRPVNFSGLLQRLQFLEASELVSPHLNSANQLLAKLSANIQRVMGFEYQLNRSQLSGSLLDIASCKPVSCFHSQFGQSACWAPFDIYMENAMDGKQLPIKSAVDVLTEAIKTLQAFNQASWQETFLALWLSALRLVQRERDPPEGPIPRLEARLCVLLSIVPLAITNVLEDEAKLCHSSTAGATFTGSVESGYGHKMNGKGCASRKDGLISSLQILGHFSGLLCPPLSVTDAANTAARKAASFITNAKNQRDIIRGGSLVDASIKAGGNMRHLIVEACIARNLIDTSAYIWPGYVSAPIISLSDSSSHDKSPWLMFMEGAPLNGSLIDYLIMNPASSLAEIEKLFSIALNGSEEEKSAAAKILCGASLSRGWNIQEHVVRFVVKLLSPPIPPSHTGPGSHLVDDMSMLCALLFGASSIDTVHILSLHGAVPEVAASLMPLCEVFGSLKPASRNKSSKDDEPSIYMVFSFAFLYLLRLWKFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIYIDSYPKLRAWYCQNKSCIASTLAGLSSGNPVHQVANKILSMIYWKMTKSAASSGNSSTPTSGSACESPRSTGEDAYQRPVLPAWEVLEAIPFVLEAILTACANGRLSSRDLTTGLRDLVDFLPASLAAIVSYFSAEVTRGIWKPVAMNGKDWPSPAAILPSMESEIKAVLAAVGVDAPSCSTGNSPIMLPLPMAALVSLTITFKLDKSLEYIHSVAGLALEHCASGCPWPSMHIIGSLWAQKIRRWHNFIVVSSSRSIFRQNKEAIAQLLRSCFTSFLGSLNISTSSLSNQSSVNGLLGSTISVGGGGSSVAPGFLFLRSCRTIHNVHYVSDIIVGLVAEYARNLASRWASTDSPRLKSSQASLSIASVRAREVATLGASLLCVTGGVQLVQELFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAYLLILSGAIVWGVEAKLTTCAFSRRARAVGVHMDFLAGVLEGNISLGCDPATWKAYLSCLVGLMVRFAPAWIQEVKLETLRKLACGLRGWHECELAISLLERGGTAAIGSVAELLNVIS
Length1089
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy0.192
Instability index48.04
Isoelectric point8.63
Molecular weight117504.52
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17427
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     251.51|      58|      76|     622|     697|       1
---------------------------------------------------------------------------
  124-  176 (54.24/19.30)	NQASWQET..FLALW..LSAlrlvqrerdppegpIP.RLEARL..CV...............LLSIVPLAITNVL
  619-  673 (83.20/42.85)	....YQRP..VLPAWEvLEA..............IPFVLEAILTACANGRLSSRDLTTGLRDLVDFLPASLAAIV
  691-  740 (80.09/59.25)	NGKDWPSPaaILPSME..SE..............I....KAVLAAVGVDAPSC...STGNSPIM..LPLPMAALV
  978- 1006 (33.99/ 9.22)	...................A..............IVWGVEAKLTTCA...FSRRARAVGVH..MDFL........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.88|      51|     210|      15|      68|       2
---------------------------------------------------------------------------
   15-   68 (79.89/58.26)	GLLQRLQFL.EASELVSPHLN..SANQLLAKLSANIQRVMGFEYQLNRsqlSGSLLD
  215-  268 (77.00/48.69)	GLISSLQILgHFSGLLCPPLSvtDAANTAARKAASFITNAKNQRDIIR...GGSLVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.33|      47|     255|     551|     602|       3
---------------------------------------------------------------------------
  551-  602 (76.48/59.89)	RAWYCQNK........SCIASTLAGL..SSGNPVHQVA.NKILSmiyWkmTKSAASSGNSSTP
  799-  856 (65.84/38.19)	RSIFRQNKeaiaqllrSCFTSFLGSLniSTSSLSNQSSvNGLLG...S..TISVGGGGSSVAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.35|       9|     680|     368|     379|       6
---------------------------------------------------------------------------
  368-  379 (15.15/13.34)	KILCGAslsRGW
 1052- 1060 (20.21/ 9.31)	KLACGL...RGW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.39|      26|     448|      69|      96|       8
---------------------------------------------------------------------------
   69-   96 (43.65/37.20)	IASCKpVSCFhSQFGQSACWAPFDIYME
  520-  545 (48.75/30.32)	IASCQ.VETY.SNPNQSEPASGKPIYID
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17427 with Med33 domain of Kingdom Viridiplantae
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