<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17426

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X3
SequenceMGSECDLGGFEQVVLETLKRCQQQNESTLVWVMEVAKCIRSLGVALPCLELGQVLVSQLCFDDNNSSLWKFVELALSSGLLYPLHVLSLLTSRILPHRRSQPKAYRLYLELLSRYAFSFNPGKADACKEKITKSVDVALQLSQLYRIRVLELGQAFVLFFFSMIIGLIDSTLDDWGLHMTPTDGPSLVLGSTDHHDMDIDFKGSHNVKGNEHHEKMRTTNSFTAIEVLGKLTESRKAMVILRLVHLNMPVNFSGLLQRLQFLEASELVSPHLNSANQLLAKLSANIQRVMGFEYQLNRSQLSGSLLDIASCKPVSCFHSQFGQSACWAPFDIYMENAMDGKQLPIKSAVDVLTEAIKTLQAFNQASWQETFLALWLSALRLVQRERDPPEGPIPRLEARLCVLLSIVPLAITNVLEDEAKLCHSSTAGATFTGSVESGYGHKMNGKGCASRKDGLISSLQILGHFSGLLCPPLSVTDAANTAARKAASFITNAKNQRDIIRGGSLVDASIKAGGNMRHLIVEACIARNLIDTSAYIWPGYVSAPIISLSDSSSHDKSPWLMFMEGAPLNGSLIDYLIMNPASSLAEIEKLFSIALNGSEEEKSAAAKILCGASLSRGWNIQVPEVAASLMPLCEVFGSLKPASRNKSSKDDEPSIYMVFSFAFLYLLRLWKFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIYIDSYPKLRAWYCQNKSCIASTLAGLSSGNPVHQVANKILSMIYWKMTKSAASSGNSSTPTSGSACESPRSTGEDAYQRPVLPAWEVLEAIPFVLEAILTACANGRLSSRDLTTGLRDLVDFLPASLAAIVSYFSAEVTRGIWKPVAMNGKDWPSPAAILPSMESEIKAVLAAVGVDAPSCSTGNSPIMLPLPMAALVSLTITFKLDKSLEYIHSVAGLALEHCASGCPWPSMHIIGSLWAQKIRRWHNFIVVSSSRSIFRQNKEAIAQLLRSCFTSFLGSLNISTSSLSNQSSVNGLLGSTISVGGGGSSVAPGFLFLRSCRTIHNVHYVSDIIVGLVAEYARNLASRWASTDSPRLKSSQASLSIASVRAREVATLGASLLCVTGGVQLVQELFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAYLLILSGAIVWGVEAKLTTCAFSRRARAVGVHMDFLAGVLEGNISLGCDPATWKAYLSCLVGLMVRFAPAWIQEVKLETLRKLACGLRGWHECELAISLLERGGTAAIGSVAELLNVIS
Length1274
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy0.148
Instability index47.03
Isoelectric point8.48
Molecular weight138679.81
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17426
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.34|      29|      98|      49|      89|       1
---------------------------------------------------------------------------
   50-   89 (43.24/47.72)	ELGQVLVsqLCF.....DDNNSSL..WkfvelalssGL.LYPLHVLSL
  151-  187 (38.10/17.36)	ELGQAFV..LFFfsmiiGLIDSTLddW.........GLhMTPTDGPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     371.83|      95|      99|     936|    1032|       2
---------------------------------------------------------------------------
  815-  931 (114.00/68.28)	.LEAIPFVL.E.AILTACAN..GrlssrdlttglrdlvdfLP.ASLAAIVSYFSAEVT....RgiWKP..VAMNGKD..WPSPAAILPSMESEIKAVLA.AVGVDAPSCSTGNSpimlplpMAALVSLTITF
  936- 1032 (158.78/104.16)	SLEYIHSVA.G.LALEHCAS..G.................CPWPSMHIIGSLWAQKIR....R..WHNfiVVSSSRSIFRQNKEAIAQLLRSCFTSFLG.SLNISTSSLSNQSS.......VNGLLGSTISV
 1037- 1127 (99.05/58.26)	S.....SVApGfLFLRSCRTihN.................VHYVSDIIVG.LVAEYARnlasR..WAS...TDSPRLKSSQASLSIAS.VRAREVATLGaSLLCVTGGV...QL.......VQELFRNTI..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.66|      24|      31|     252|     275|       4
---------------------------------------------------------------------------
  252-  275 (42.22/21.49)	FSGLLQR.LQF...LEASELVSPHLNSA
  282-  309 (30.45/13.71)	LSANIQRvMGFeyqLNRSQLSGSLLDIA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.06|      22|      25|     547|     571|       5
---------------------------------------------------------------------------
  529-  545 (24.67/ 7.74)	.LI.DTSAY...IWPGYV.SAPI
  547-  568 (40.39/29.39)	SLS.DSSSHDKSPWLMFMEGAPL
  592-  614 (28.00/10.44)	SIAlNGSEEEKSAAAKILCGASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.95|      13|     600|     616|     630|       7
---------------------------------------------------------------------------
  616-  630 (20.81/17.70)	RGWniQVPEVAASLM
 1243- 1255 (26.14/15.11)	RGW..HECELAISLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.20|      21|      31|     708|     728|       9
---------------------------------------------------------------------------
  708-  728 (38.89/22.12)	CQVETYSNPNQSEPASGKPIY
  740-  760 (37.30/20.93)	CQNKSCIASTLAGLSSGNPVH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17426 with Med33 domain of Kingdom Viridiplantae
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