<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17425

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X2
SequenceMGSECDLGGFEQVVLETLKRCQQQNESTLVWVMEVAKCIRSLGVALPCLELGQVLVSQLCFDDNNSSLWKFVELALSSGLLYPLHVLSLLTSRILPHRRSQPKAYRLYLELLSRYAFSFNPGKADACKEKITKSVDVALQLSQLYRIRVLELGQAFVLFFFSMIIGLIDSTLDDWGLHMTPTDGPSLVLGSTDHHDMDIDFKGSHNVKGNEHHEKMRTTNSFTAIEVLGKLTESRKAMVILRLVHLNMPVNFSGLLQRLQFLEASELVSPHLNSANQLLAKLSANIQRVMGFEYQLNRSQLSGSLLDIASCKPVSCFHSQFGQSACWAPFDIYMENAMDGKQLPIKSAVDVLTEAIKTLQAFNQERDPPEGPIPRLEARLCVLLSIVPLAITNVLEDEAKLCHSSTAGATFTGSVESGYGHKMNGKGCASRKDGLISSLQILGHFSGLLCPPLSVTDAANTAARKAASFITNAKNQRDIIRGGSLVDASIKAGGNMRHLIVEACIARNLIDTSAYIWPGYVSAPIISLSDSSSHDKSPWLMFMEGAPLNGSLIDYLIMNPASSLAEIEKLFSIALNGSEEEKSAAAKILCGASLSRGWNIQEHVVRFVVKLLSPPIPPSHTGPGSHLVDDMSMLCALLFGASSIDTVHILSLHGAVPEVAASLMPLCEVFGSLKPASRNKSSKDDEPSIYMVFSFAFLYLLRLWKFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIYIDSYPKLRAWYCQNKSCIASTLAGLSSGNPVHQVANKILSMIYWKMTKSAASSGNSSTPTSGSACESPRSTGEDAYQRPVLPAWEVLEAIPFVLEAILTACANGRLSSRDLTTGLRDLVDFLPASLAAIVSYFSAEVTRGIWKPVAMNGKDWPSPAAILPSMESEIKAVLAAVGVDAPSCSTGNSPIMLPLPMAALVSLTITFKLDKSLEYIHSVAGLALEHCASGCPWPSMHIIGSLWAQKIRRWHNFIVVSSSRSIFRQNKEAIAQLLRSCFTSFLGSLNISTSSLSNQSSVNGLLGSTISVGGGGSSVAPGFLFLRSCRTIHNVHYVSDIIVGLVAEYARNLASRWASTDSPRLKSSQASLSIASVRAREVATLGASLLCVTGGVQLVQELFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAYLLILSGAIVWGVEAKLTTCAFSRRARAVGVHMDFLAGVLEGNISLGCDPATWKAYLSCLVGLMVRFAPAWIQEVKLETLRKLACGLRGWHECELAISLLERGGTAAIGSVAELLNVIS
Length1308
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.162
Instability index46.77
Isoelectric point8.29
Molecular weight141991.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17425
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.78|      19|      44|     530|     548|       1
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  530-  548 (34.26/19.42)	DSSSHDKSPWLMFME...GAPL
  554-  575 (20.49/ 8.67)	DYLIMNPASSLAEIEklfSIAL
  576-  594 (27.04/13.78)	NGSEEEKSAAAKILC...GASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.02|      72|      96|     610|     681|       2
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  610-  681 (123.08/65.52)	KLLSPPIPPSHTGPGSHLVDDMSMLCALLFGASSIDTVHILSLHGAVPEVAASLMPL.CEVFGSLKP.ASRNKS
  705-  778 (114.94/60.73)	KFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIyIDSYPKLRAwYCQNKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.38|      28|      29|     856|     883|       4
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  856-  881 (37.39/22.91)	...............LEAILTA.......CANGRLSSRDLTTGLRDLV
  882-  907 (28.60/15.53)	DF.........lpasLAAIVS.............YFSAEVTRGIWKPV
  913-  959 (28.39/15.35)	DWpspaailpsmeseIKAVLAAvgvdapsCSTGN.SPIMLPLPMAALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.81|      21|      23|     392|     414|       5
---------------------------------------------------------------------------
  392-  408 (21.97/11.72)	.........TNVLED.EAKLCH..SSTAG
  411-  434 (27.97/22.01)	FTGSvesgyGHKM...NGKGCA..SRKDG
  435-  458 (24.87/10.62)	LISS.....LQILGHfSGLLCPplSVTDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.34|      29|      98|      49|      89|       6
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   50-   89 (43.24/39.51)	ELGQVLVsqLCF.....DDNNSSL..WkfvelalssGL.LYPLHVLSL
  151-  187 (38.10/14.35)	ELGQAFV..LFFfsmiiGLIDSTLddW.........GLhMTPTDGPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.62|      14|     680|     500|     523|       7
---------------------------------------------------------------------------
  485-  498 (24.08/19.41)	LVDASIKA.GGNMRH
  509-  523 (19.54/ 8.00)	LIDTSAYIwPGYVSA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.12|      45|      76|     970|    1015|       8
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  970- 1015 (78.99/48.37)	SLEYIHSVAGLALEHCASGCPWPSMhIIGSLWAQKIRRWHNFIVVS
 1016- 1043 (32.66/13.78)	SSRSIFRQNKEAIAQLLRSC.FTS..FLGSL...............
 1049- 1093 (74.47/40.95)	SLSNQSSVNGLLGSTISVGGGGSSV.APGFLFLRSCRTIHNVHYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.36|      14|      23|     243|     259|      10
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  243-  259 (20.23/23.44)	LV..HLNmpvNFSGLLQRL
  267-  282 (19.13/10.78)	LVspHLN...SANQLLAKL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.61|      63|     101|    1137|    1206|      11
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 1137- 1206 (97.67/65.76)	ATLGASLLCVTGgvqlvqeLFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAY.LLILSGAIVWGVEAKL
 1240- 1303 (101.94/56.36)	ATWKAYLSCLVG.......LMVRFAPAWIQEVKLETLRKLACGLRGWHECELAIsLLERGGTAAIGSVAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.55|      17|     494|     339|     356|      12
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  339-  356 (25.09/16.25)	DGKQLPIKSAVDVLtEAI
  836-  852 (32.46/17.17)	DAYQRPVLPAWEVL.EAI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17425 with Med33 domain of Kingdom Viridiplantae
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