<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17425

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X2
SequenceMGSECDLGGFEQVVLETLKRCQQQNESTLVWVMEVAKCIRSLGVALPCLELGQVLVSQLCFDDNNSSLWKFVELALSSGLLYPLHVLSLLTSRILPHRRSQPKAYRLYLELLSRYAFSFNPGKADACKEKITKSVDVALQLSQLYRIRVLELGQAFVLFFFSMIIGLIDSTLDDWGLHMTPTDGPSLVLGSTDHHDMDIDFKGSHNVKGNEHHEKMRTTNSFTAIEVLGKLTESRKAMVILRLVHLNMPVNFSGLLQRLQFLEASELVSPHLNSANQLLAKLSANIQRVMGFEYQLNRSQLSGSLLDIASCKPVSCFHSQFGQSACWAPFDIYMENAMDGKQLPIKSAVDVLTEAIKTLQAFNQERDPPEGPIPRLEARLCVLLSIVPLAITNVLEDEAKLCHSSTAGATFTGSVESGYGHKMNGKGCASRKDGLISSLQILGHFSGLLCPPLSVTDAANTAARKAASFITNAKNQRDIIRGGSLVDASIKAGGNMRHLIVEACIARNLIDTSAYIWPGYVSAPIISLSDSSSHDKSPWLMFMEGAPLNGSLIDYLIMNPASSLAEIEKLFSIALNGSEEEKSAAAKILCGASLSRGWNIQEHVVRFVVKLLSPPIPPSHTGPGSHLVDDMSMLCALLFGASSIDTVHILSLHGAVPEVAASLMPLCEVFGSLKPASRNKSSKDDEPSIYMVFSFAFLYLLRLWKFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIYIDSYPKLRAWYCQNKSCIASTLAGLSSGNPVHQVANKILSMIYWKMTKSAASSGNSSTPTSGSACESPRSTGEDAYQRPVLPAWEVLEAIPFVLEAILTACANGRLSSRDLTTGLRDLVDFLPASLAAIVSYFSAEVTRGIWKPVAMNGKDWPSPAAILPSMESEIKAVLAAVGVDAPSCSTGNSPIMLPLPMAALVSLTITFKLDKSLEYIHSVAGLALEHCASGCPWPSMHIIGSLWAQKIRRWHNFIVVSSSRSIFRQNKEAIAQLLRSCFTSFLGSLNISTSSLSNQSSVNGLLGSTISVGGGGSSVAPGFLFLRSCRTIHNVHYVSDIIVGLVAEYARNLASRWASTDSPRLKSSQASLSIASVRAREVATLGASLLCVTGGVQLVQELFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAYLLILSGAIVWGVEAKLTTCAFSRRARAVGVHMDFLAGVLEGNISLGCDPATWKAYLSCLVGLMVRFAPAWIQEVKLETLRKLACGLRGWHECELAISLLERGGTAAIGSVAELLNVIS
Length1308
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
Lineage
Aromaticity0.07
Grand average of hydropathy0.162
Instability index46.77
Isoelectric point8.29
Molecular weight141991.66
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17425
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.78|      19|      44|     530|     548|       1
---------------------------------------------------------------------------
  530-  548 (34.26/19.42)	DSSSHDKSPWLMFME...GAPL
  554-  575 (20.49/ 8.67)	DYLIMNPASSLAEIEklfSIAL
  576-  594 (27.04/13.78)	NGSEEEKSAAAKILC...GASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     238.02|      72|      96|     610|     681|       2
---------------------------------------------------------------------------
  610-  681 (123.08/65.52)	KLLSPPIPPSHTGPGSHLVDDMSMLCALLFGASSIDTVHILSLHGAVPEVAASLMPL.CEVFGSLKP.ASRNKS
  705-  778 (114.94/60.73)	KFYRPPLEQCISERGVAVRGELTLEYLLLLRNRSIASCQVETYSNPNQSEPASGKPIyIDSYPKLRAwYCQNKS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.38|      28|      29|     856|     883|       4
---------------------------------------------------------------------------
  856-  881 (37.39/22.91)	...............LEAILTA.......CANGRLSSRDLTTGLRDLV
  882-  907 (28.60/15.53)	DF.........lpasLAAIVS.............YFSAEVTRGIWKPV
  913-  959 (28.39/15.35)	DWpspaailpsmeseIKAVLAAvgvdapsCSTGN.SPIMLPLPMAALV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.81|      21|      23|     392|     414|       5
---------------------------------------------------------------------------
  392-  408 (21.97/11.72)	.........TNVLED.EAKLCH..SSTAG
  411-  434 (27.97/22.01)	FTGSvesgyGHKM...NGKGCA..SRKDG
  435-  458 (24.87/10.62)	LISS.....LQILGHfSGLLCPplSVTDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.34|      29|      98|      49|      89|       6
---------------------------------------------------------------------------
   50-   89 (43.24/39.51)	ELGQVLVsqLCF.....DDNNSSL..WkfvelalssGL.LYPLHVLSL
  151-  187 (38.10/14.35)	ELGQAFV..LFFfsmiiGLIDSTLddW.........GLhMTPTDGPSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.62|      14|     680|     500|     523|       7
---------------------------------------------------------------------------
  485-  498 (24.08/19.41)	LVDASIKA.GGNMRH
  509-  523 (19.54/ 8.00)	LIDTSAYIwPGYVSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     186.12|      45|      76|     970|    1015|       8
---------------------------------------------------------------------------
  970- 1015 (78.99/48.37)	SLEYIHSVAGLALEHCASGCPWPSMhIIGSLWAQKIRRWHNFIVVS
 1016- 1043 (32.66/13.78)	SSRSIFRQNKEAIAQLLRSC.FTS..FLGSL...............
 1049- 1093 (74.47/40.95)	SLSNQSSVNGLLGSTISVGGGGSSV.APGFLFLRSCRTIHNVHYVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.36|      14|      23|     243|     259|      10
---------------------------------------------------------------------------
  243-  259 (20.23/23.44)	LV..HLNmpvNFSGLLQRL
  267-  282 (19.13/10.78)	LVspHLN...SANQLLAKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.61|      63|     101|    1137|    1206|      11
---------------------------------------------------------------------------
 1137- 1206 (97.67/65.76)	ATLGASLLCVTGgvqlvqeLFRNTIPTWLISSRKQKLHKVSVVSRIVEGYAMAY.LLILSGAIVWGVEAKL
 1240- 1303 (101.94/56.36)	ATWKAYLSCLVG.......LMVRFAPAWIQEVKLETLRKLACGLRGWHECELAIsLLERGGTAAIGSVAEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.55|      17|     494|     339|     356|      12
---------------------------------------------------------------------------
  339-  356 (25.09/16.25)	DGKQLPIKSAVDVLtEAI
  836-  852 (32.46/17.17)	DAYQRPVLPAWEVL.EAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17425 with Med33 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA