<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17423

Description U-box domain-containing protein 52-like isoform X2
SequenceMWLARNNGEKKSGRGSGMVAVAIDKDRGSQNALKWAIDNLLQKGQTAVLIHVKVKSSSFPNSALPSPRLRYDIGDECSLVCKDPDKQTREIFLPFRCFCTRKDIRSKDIVLEGTDVSKALIEYVNHCAIENLVLGSAAKPGFFRFKTTDVPGNVSKGVPDFCNVYVIAKGKISSMKSASRAAPVFSLRGSLLNQGSIKSDTAEPQLIDFAATVKGAERLQSELPRRSLHDETDLIRSPLPRKGLNWKSYGELPLLDADISFVSSGRPSIDRVFHYDHMNEIGHRTPSRLSHISERDMINPSFEPLYFGRKSVDIASPPPESLAFSSESDQDRLSGELQSTEGALEDEMRRLKLELKQTMEMYSTACKEALTAKQMAVELQRWKLEEVRRLEDAQLAEEAALATVEKEKAKSRAAIEAAEAAKRIAELEAQKRINAEMKALRETEEKRKAFDALAHSDGRCRRYTIDEIEVATEFFRVSRKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFCRGNTRPLSWQKRFKIAAEVATGLLFLHQAKPEPLVHRDLKPANILLDSNYVSKISDVGLARLVPPSVADNMTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSIGIMFLQMITAKPPMGLTHLVERAIETGTFSEMLDPLVLDWPAEEAMCFAKLALKCAELRRKDRPDLCKDILPELNRLRVLAEETMYPTPMNGSPGSSPDRSQVSLQLEGDLPHTQSGESSRTPSL
Length789
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.377
Instability index48.65
Isoelectric point7.18
Molecular weight88046.86
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17423
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.01|      12|      15|     300|     313|       1
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  300-  311 (23.61/16.83)	PSFEPLYFGRKS
  317-  328 (22.39/ 8.18)	PPPESLAFSSES
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.70|      54|      56|     341|     396|       2
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  341-  396 (80.67/55.60)	EGALEdEMRRLKLELKQTMEMYSTACKEA.LTA.KQMAVELQRWK.LEEVRRLEDAqLA
  398-  454 (69.03/39.49)	EAALA.TVEKEKAKSRAAIEAAEAAKRIAeLEAqKRINAEMKALReTEEKRKAFDA.LA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.82|      26|      26|     199|     224|       3
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  199-  224 (43.28/26.84)	SDTAEPQLIDFAATVKGAE.RLQSELP
  227-  253 (41.54/25.47)	SLHDETDLIRSPLPRKGLNwKSYGELP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.23|      41|     498|     102|     145|       4
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  102-  144 (64.12/50.03)	KDIRSKDIVLEGTDVSK....ALIEYVNHCAIENLV...LGSAAkpGFFR
  596-  643 (60.11/38.79)	RDLKPANILLDSNYVSKisdvGLARLVPPSVADNMTqyrMTSTA..GTFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.29|      30|     394|     262|     295|       5
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  262-  295 (48.46/42.57)	VSSGRPSIDRVFhydhMNEIGHRTPSRLSHISER
  657-  686 (53.84/34.92)	VKSDIYSIGIMF....LQMITAKPPMGLTHLVER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.97|      22|     648|      59|      83|       6
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   59-   83 (34.39/29.56)	FPNSALPSPRLRYDigDECSLvCKD
  712-  733 (40.59/23.33)	FAKLALKCAELRRK..DRPDL.CKD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17423 with Med32 domain of Kingdom Viridiplantae
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