<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP17422

Description U-box domain-containing protein 52-like isoform X1
SequenceMWLARNNGEKKSGRGSGMVAVAIDKDRGSQNALKWAIDNLLQKGQTAVLIHVKVKSSSFPNSALPSPRLRYDIGDECSLVCKDPDKQTREIFLPFRCFCTRKDIRSKDIVLEGTDVSKALIEYVNHCAIENLVLGSAAKPGFFRRFKTTDVPGNVSKGVPDFCNVYVIAKGKISSMKSASRAAPVFSLRGSLLNQGSIKSDTAEPQLIDFAATVKGAERLQSELPRRSLHDETDLIRSPLPRKGLNWKSYGELPLLDADISFVSSGRPSIDRVFHYDHMNEIGHRTPSRLSHISERDMINPSFEPLYFGRKSVDIASPPPESLAFSSESDQDRLSGELQSTEGALEDEMRRLKLELKQTMEMYSTACKEALTAKQMAVELQRWKLEEVRRLEDAQLAEEAALATVEKEKAKSRAAIEAAEAAKRIAELEAQKRINAEMKALRETEEKRKAFDALAHSDGRCRRYTIDEIEVATEFFRVSRKIGEGGYGPVYKCYLDHTPVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLFCRGNTRPLSWQKRFKIAAEVATGLLFLHQAKPEPLVHRDLKPANILLDSNYVSKISDVGLARLVPPSVADNMTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSIGIMFLQMITAKPPMGLTHLVERAIETGTFSEMLDPLVLDWPAEEAMCFAKLALKCAELRRKDRPDLCKDILPELNRLRVLAEETMYPTPMNGSPGSSPDRSQVSLQLEGDLPHTQSGESSRTPSL
Length790
PositionTail
OrganismJuglans regia (English walnut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fagales> Juglandaceae> Juglans.
Aromaticity0.07
Grand average of hydropathy-0.382
Instability index49.33
Isoelectric point7.49
Molecular weight88203.05
Publications
PubMed=27145194

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP17422
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.01|      12|      15|     301|     314|       4
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  301-  312 (23.61/15.99)	PSFEPLYFGRKS
  318-  329 (22.39/ 7.94)	PPPESLAFSSES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.23|      14|      26|     204|     229|       5
---------------------------------------------------------------------------
  204-  229 (17.13/28.12)	EPQLIdfaatvkgaerlQSELPRRSL
  232-  245 (26.10/12.71)	ETDLI............RSPLPRKGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.34|      17|     498|     102|     118|       6
---------------------------------------------------------------------------
  102-  118 (27.63/17.98)	KDIRSKDIVLEGTDVSK
  597-  613 (28.71/18.95)	RDLKPANILLDSNYVSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.45|      19|     202|      58|      76|       9
---------------------------------------------------------------------------
   58-   76 (36.85/17.82)	SFPNSALPS.PR.LRYDIGDE
  261-  281 (29.60/13.18)	SFVSSGRPSiDRvFHYDHMNE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP17422 with Med32 domain of Kingdom Viridiplantae
Unable to open file!